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Protein Alignments organised as Structural Superfamilies


Superfamily :     Peptide deformylase
Class :    Alpha and beta proteins (a+b)
Fold :    Peptide deformylase
Number of Members :     1
Average Size :     164


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1g2aa- 1 A 164 A 164 polypeptide deformylase escherichia coli 1.75 0.190

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1g2aa-  (   1 )    svlqVlhIpderLrkvAkpVeeVnaeIqriVddMFeTMyaeegiGLAATQ
                             3333          aaaaaaaaaaaaaaaa    bbb333
 


    
1g2aa-  (  51 )    VdihqrIIVIDvsenrderlVLInPelleksgetGieegClSIpeqralV
                   3     bbbb         bbbbbbbbbbbb     bbbb  bbbbbbb 
 


    
1g2aa-  ( 101 )    pRaekVkIrAldrdgkpfeleAdgllAICIqhEmdHLvGkLFMdylsplk
                       bbbbbbb     bbbbbb aaaaaaaaaaaaa     3333  aaa
 


    
1g2aa-  ( 151 )    qqrirqkVekldrl
                   aaaaaaaaaaaaa 
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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