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Protein Alignments organised as Structural Superfamilies |
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|
| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1a06-- | 10 | - | 316 | - | 279 | calcium/calmodulin-dependent protein kinase | rattus norvegicus | 2.5 | 0.201 |
| 1a6o-- | 7 | - | 333 | - | 327 | protein kinase ck2 | zea mays | 2.00 | 0.195 |
| 1apme- | 10 | E | 350 | E | 341 | $c-/amp$-dependent protein kinase (e.c.2.7.1.37) ($c/apk | recombinant mouse (mus $musculus) "alpha" isoenzyme | 2.0 | 0.201 |
| 1b6cb- | 175 | B | 500 | B | 326 | tgf-b superfamily receptor type i | homo sapiens | 2.6 | 0.249 |
| 1csn-- | 6 | - | 298 | - | 293 | molecule | casein kinase-1 | 2.0 | 0.249 |
| 1f3mc- | 249 | C | 542 | C | 287 | serine/threonine-protein kinase pak-alpha | homo sapiens | 2.30 | 0.237 |
| 1fgka- | 464 | A | 762 | A | 278 | fgf receptor 1 | homo sapiens | 2.0 | 0.213 |
| 1h8fa- | 35 | A | 386 | A | 352 | glycogen synthase kinase-3 beta | homo sapiens | 2.8 | 0.220 |
| 1howa- | 144 | A | 737 | A | 346 | serine/threonine-protein kinase ymr216c | saccharomyces cerevisiae | 2.10 | 0.204 |
| 1ia8a- | 2 | A | 276 | A | 272 | chk1 checkpoint kinase | homo sapiens | 1.70 | 0.216 |
| 1ir3a- | 981 | A | 1283 | A | 300 | peptide substrate | homo sapiens | 1.9 | 0.194 |
| 1jvpp- | 1 | P | 298 | P | 268 | cell division protein kinase 2 | homo sapiens | 1.53 | 0.206 |
| 1koba- | 23 | A | 375 | A | 353 | twitchin | aplysia californica | 2.3 | 0.1999 |
| 1phk-- | 15 | - | 291 | - | 277 | phosphorylase kinase | oryctolagus cuniculus | 2.2 | 0.210 |
| 1pme-- | 16 | - | 360 | - | 333 | erk2 | homo sapiens | 2.0 | 0.212 |
| 1qpca- | 231 | A | 501 | A | 269 | lck kinase | homo sapiens | 1.6 | 0.200 |
| 1tkia- | 18 | A | 338 | A | 321 | titin | homo sapiens | 2.0 | 0.207 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1a06-- ( 10 ) wkqaedIrdiYdfrdvLgtgafseviL
1a6o-- ( 7 ) skArvyadvNvlrpkeywdyealtvqwgeqddyevvrkvgrgkysevfe
1apme- ( 10 ) seqesvkeflakakedFlkkwetpsqntAqldqFdrikTLgtgsfgrvmL
1b6cb- ( 175 ) ttLkdliydmttsgsGSGLpllvqrtIArtIvlqesigkgrfgevwr
1csn-- ( 6 ) nvVGvhYkVgrrigegsfGvife
1f3mc- ( 249 ) sdeeilekLrsiVsvgdPkkkYtrfekigqgasGtVyt
1fgka- ( 464 ) elpedprwelprdrLvlgkp-----lgqvvl
1h8fa- ( 35 ) skvttvvAtpGqgpdrpqevsytdtkvigngsfgvvyq
1howa- ( 144 ) fhpafkgepYkdarYiLvrklgwghfstvwl
1ia8a- ( 2 ) avpfvedwdlvqtlgegaygevql
1ir3a- ( 981 ) ssvfvpdewevsrekItllrelgqgsFGmvye
1jvpp- ( 1 ) menFqkvekigegtyGvvyk
1koba- ( 23 ) indydkfyediwkkyvpqpVevkqgsvydyYdIleeLgsGaFgvVhr
1phk-- ( 15 ) FyenYepkeilgrgvssvvrr
1pme-- ( 16 ) gqvFdVgprYtnlsyi---gygmvCs
1qpca- ( 231 ) kpwwedewevpretLklverlgagqfgevwm
1tkia- ( 18 ) keLyekYmiaedLgrgefGiVhr
bbbbbbbbb bbbb
1a06-- ( 37 ) Aed-----krtqklVaIkcia------------------keneiavlh--
1a6o-- ( 56 ) Gin-----vnnnekCiIkiLkpvk------------kkkikrEIkILqn-
1apme- ( 60 ) Vkh-----kesgnhyaMkILdKqkVvk------lkqiehtlnEkrILq--
1b6cb- ( 222 ) Gk-------wrgeeVaVkiFssre------------erSwfREaeIYqt-
1csn-- ( 29 ) gtn-----llnnqqVaIkfEprrs-----------dApqLrdEyrtYkl-
1f3mc- ( 287 ) Amd-----vatgqeVAIRqMnlqqq---------pkkelIIneIlvmr--
1fgka- ( 495 ) AeAig--lpnrvtkVaVkmlksdate--------kdlsdlisEMemMkm-
1h8fa- ( 73 ) AkL-----cdsgelVaIkkvlqg-------------kafknreLqIMr--
1howa- ( 175 ) AkD-----mvnnthVaMkiVrgdkv----------yteaAedEIkLLqrV
1ia8a- ( 26 ) AvN-----rvteeaVaVkivdmkr-----------cpenikkeIcINk--
1ir3a- (1013 ) GnArdIikgeaetrVaVktvnesAsl--------rerieflneasvMk--
1jvpp- ( 21 ) Arn-----kltgevVaLkkIrvp--------------stAireIsllk--
1koba- ( 70 ) Cve-----katgrvFVAKfInTpyp---------ldkytVkneIsIMn--
1phk-- ( 36 ) Cih-----kptckeyaVkiIdVtgggsfsaeevqelreaTlkEVdILrk-
1pme-- ( 42 ) AyD-----nvnkvrVaIkkIsPfehq--------tyCqrTlreIkILL--
1qpca- ( 262 ) Gyy------nghtkVaVksLkqgsm----------spdaflaeAnlMk--
1tkia- ( 41 ) Cve-----tsskktyMAKfVkVkgt----------dQvlVkkeisiLn--
bbb bbbbbbb aaaaaaaaaaaa
1a06-- ( 72 ) ---------kIkhpnIvaLddIy------eSgghlyLImqlVsGgeLfdr
1a6o-- ( 88 ) ---------LcggpnIVkLldiVr----dqhsktpSLIfeyVnntdfkvL
1apme- ( 97 ) ---------AVnFpFLVkLefsF------kdnsnlYMVMeYvaGGeMfsH
1b6cb- ( 252 ) --------VmLrhenIlgFIAadnk--dngtwtqLWLVsdyhehgsLfdy
1csn-- ( 62 ) ---------LagctGIPnvyyfg------qeglhnVLVid-lLgpsLedL
1f3mc- ( 321 ) ---------enknpnIVNyldSY------lvgdeLWVVMeylaGgsLtdV
1fgka- ( 538 ) ---------IgkhkNIinLlGAC------tqdgpLyVIveyAskgnLrey
1h8fa- ( 103 ) ---------kLdhcNIVrLryffyssgekkdevyLNLVld-yvpetVyrv
1howa- ( 210 ) ndAdntkedsmGAnhIlkLldhfnh--kGpngvhVVMVfe-vLgenLlal
1ia8a- ( 61 ) ---------mLnhenVVkFyghr------regniQyLfleyCsggeLfdr
1ir3a- (1053 ) ---------gFtchHVVrLLGvV------skgqptLVVmeLMahgdLksy
1jvpp- ( 57 ) ---------elnhpnivkLldvi------htenkLyLV------fdLkkf
1koba- ( 104 ) ---------qLhhpkLINLhdAF------edkyeMVLILEFLSGgELFdr
1phk-- ( 80 ) ---------VsghpnIIqLkdty------etntfFFLVfdlMkkgeLfdy
1pme-- ( 77 ) ---------rFrHenIigIndIiRa-ptieqMkdVYLVth-lMgadLykl
1qpca- ( 294 ) ---------qLqhqrLVrLyAV-------VtqepIyIIteyMengsLvdF
1tkia- ( 74 ) ---------iArhrNILhLhesf------esmeeLVMIFefIsGlDIFer
bbbbb bbbbb aaaa
1a06-- ( 107 ) Iv----------ekgfYTErdAsrlIfQVLdAVkyLH--------dlgiv
1a6o-- ( 125 ) -------------yptLtdydIryYIyeLLkALdyCH--------sqGIM
1apme- ( 132 ) Lr----------rigrFaephArfYAAQIVlTFeYLh--------sLdLI
1b6cb- ( 292 ) L-----------nrytvtvegMIkLAlsTAsGLahLHmeivgtqGKpAIA
1csn-- ( 96 ) Ld---------lcgrkFsvkTVAMAAkqMLaRVqsIH--------ekSLV
1f3mc- ( 356 ) V-----------tetcMdegqIAAVCreCLqALefLh--------snqvi
1fgka- ( 573 ) Lqar------rppeeqlsskdlvsCAyqVArGMeyLa--------skkCi
1h8fa- ( 143 ) arhy------srakqtLpviyVkLYMYQLFRSLAyIh--------sfgIC
1howa- ( 257 ) Ikk--------yehrgIpliyVkQISKQLLLGLdYMH-------rrCgII
1ia8a- ( 96 ) ie----------pdiGMpepdAQrFFhqLMaGVvyLH--------giGIT
1ir3a- (1088 ) LrsLrpeaennpgrppPtlqemIqmAAEIADGMAyLn--------akkfV
1jvpp- ( 91 ) mda--------saltgIplpLIkSYLfqLLqGlafch--------shrvl
1koba- ( 139 ) IA---------aedykMsEaeVInYMrqACeGLkhMH--------ehsIv
1phk-- ( 115 ) lt----------ekvtLsekeTrkiMraLLeVIcaLh--------klnIV
1pme-- ( 116 ) L-----------ktqhLsndhIcyfLyQILrGLkYIH--------sAnVL
1qpca- ( 328 ) Lkt--------psGikltinkLldMAaqIAeGMafIe--------ernyI
1tkia- ( 109 ) In---------tsafeLnEreIVsYVhqVCeALqfLh--------shnIG
a aaaaaaaaaaaaaaaaaaa a bb
1a06-- ( 139 ) HrdLkPenLLYysl---dedskIMIs------------------------
1a6o-- ( 154 ) HRdVkPhNVmIdh-----elrkLrLidWglAEFYh--------pgkeYnv
1apme- ( 164 ) YRdLkPenLlId------qqGYIqVtdFgfAkrv----------kgrTwt
1b6cb- ( 331 ) HrDLkSknIlVk------kngtCCIadLGLAVrhdsa---tdtIdiapnh
1csn-- ( 129 ) YrdIkPdNFliGrpn-sknanmIyVvdFgmvkfYrdpvtkqhipyrekkn
1f3mc- ( 387 ) HrdIKSdnIlLG------mdGsVkLtdFgfcA--------------qiTt
1fgka- ( 621 ) HrdLAArnVlVt------ednvMkIadFGlardihh-----idyykkttn
1h8fa- ( 179 ) HRdIkPqNLlLdp-----dtAvLkLcdFgsAkqlv--------rgepNvs
1howa- ( 292 ) HTdIkPeNVlmeivdspenlIqIkIadLgnACwy----------dehytn
1ia8a- ( 128 ) HrdIkPenLlLd------erdnLkIsdFglATvFry-----nnrerlLnk
1ir3a- (1130 ) HrdLAArnCmVa------hdftVkIGdFGmTrdie--------tdrkggk
1jvpp- ( 125 ) hrdlkPqnLlIn------teGaIklaar---------------------a
1koba- ( 172 ) HLdIKpENIMCet----kkassVKIIDFGLAtkln--------pdeivkv
1phk-- ( 147 ) HrdLkPenIlLd------ddmnIkLtdFgfScqLd--------pgekLre
1pme-- ( 147 ) HRdLkPsNLlLn-------ttdLkIcdFglArvAdpd----hdhtgflte
1qpca- ( 362 ) HrdLrAanIlVs------dtlsCkIadFglArlie-------dnetareg
1tkia- ( 142 ) HFDIrPenIIYqt----rrsstIKIIeFGqArqlk--------pgdnfrL
333bbb bbb bb
1a06-- ( 162 ) --dfpgyvAPevlaq------kpyskaVDCWSIGVIAYILL---------
1a6o-- ( 191 ) rVAsryFkGPELLVd-----lqdYDYsLDMWSLGCMFAgMIF--------
1apme- ( 198 ) lcGtpeYlAPEIils------kGYnkAVDWWaLGVLIYEMA---------
1b6cb- ( 372 ) rvgtkrYmAPevLddsInmkhFesFkraDIYaMGLVFWEIArrCsiggih
1csn-- ( 178 ) lsgtarYmSinTHlg------rEqSrrDDLEaLGHVFMYFL---------
1f3mc- ( 424 ) mvgtpyWmApevvtr------kaygpkVDIWSLGIMAIEMi---------
1fgka- ( 660 ) grlpVkWmApeALfd------riYthqSDVWSFGVLLwEIFt--------
1h8fa- ( 216 ) yiCsryYrAPELIFg-----AtdYtssIDVWSAGCVLAeLL---------
1howa- ( 564 ) siQtreYrSPEVLLg------ApWGCGADIWSTACLIFELI---------
1ia8a- ( 167 ) mcGtlpYvAPELlkr-----refhAepvDVWsCGIVLTAML---------
1ir3a- (1169 ) gllpvrwMAPeSLkd------gvFttsSDMWsFGVVLwEITs--------
1jvpp- ( 152 ) fvvtlwyrAPEiLLg-----ckyystaVDIWsLGCIFaeMv---------
1koba- ( 210 ) ttatAeFaAPEivdr------epvgfyTDMWaIGVLGYVLL---------
1phk-- ( 183 ) vcgtpSylAPEIIeCsmndnhpGYGkeVDMWsTGVIMYtLL---------
1pme-- ( 187 ) yvatrwyrAPeIMLn-----SkGytksIDIWsVGCILAEML---------
1qpca- ( 400 ) akfpikwtApeAiny------gtFtikSDVWsFGILLTEIVt--------
1tkia- ( 180 ) lftapEYYAPEvHqh------dvvstaTDMWSLGTLVYVLL---------
333 aaaa aaaaaaaaaaaaaaa
1a06-- ( 213 ) -CGYpPFydendaklfeqIl------------------------------
1a6o-- ( 228 ) -rkepFFyGhdnhdQLvkIAkvLgTdgLnvYlnkyrieldpqlealVgrh
1apme- ( 233 ) -AGypPFfadqpiqIyek--------------------------------
1b6cb- ( 422 ) edyqlPYydlVpsdPsveeMrkvV-------------------------c
1csn-- ( 213 ) -rgsLpWqglkaatnkqkyerI----------------------------
1f3mc- ( 459 ) -egeppylnenplrAlylIa------------------------------
1fgka- ( 696 ) -lGgsPypgvpVeeLfklL-------------------------------
1h8fa- ( 252 ) -lgqpIFpgdsgvdqlveIIkvlgtPtreqIre--------Mnpnytefa
1howa- ( 599 ) -TGdfLFePddddHiaqIiellgelpsyLlrnGk-----ytrtffsklkf
1ia8a- ( 203 ) -AGelPWdqPsdscqeYsdW------------------------------
1ir3a- (1205 ) -lAeqPyqglsneqVlkfV-------------------------------
1jvpp- ( 198 ) -trralFpGdseidQLfrIFrtLgTPdevvW------------pgVtsmp
1koba- ( 245 ) -SGlsPFageddleTlqnVk------------------------------
1phk-- ( 224 ) -AGspPFwhrkqmlmlrmIm------------------------------
1pme-- ( 223 ) -snrpIFpGkhyldQLnhILgilGspsqedlnci------inlkArnyLl
1qpca- ( 436 ) -hGriPYpgmtnpeViqnl-------------------------------
1tkia- ( 215 ) -SGinPFlaetnqqiienIm------------------------------
a aaaaaaaaa
1a06-- ( 232 ) ---kaeyefdspyWddIsdsAkdFIrhLMekd-----pekRftCeqAlqh
1a6o-- ( 277 ) srkpWlkfmnadNqhLVspeAidFLdkLLryd-----HqeRltAleAmth
1apme- ( 250 ) -----IvsgkvrfpshFssdLkdLLrnLLqvdltkRfGnlkngvndIknh
1b6cb- ( 447 ) eqklrPnipnrWqsceALrvMAkIMreCWyan-----gaaRltAlrIk-k
1csn-- ( 234 ) -gekKqsTpLreLCagfpeEFykYMhyArnla-----fdatPdydyLq-g
1f3mc- ( 478 ) ----tnGtPelqnpekLsaiFrdFlnrCLdmd-----vekRGsAkeLlqh
1fgka- ( 714 ) -----keghrmdkpsnCtneLymmMrdCWhav-----psqRptFkqLv-e
1h8fa- ( 293 ) fpqikahpwtkvFrprtppeAiaLCsrLLeYt-----ptaRltpLeACAh
1howa- ( 659 ) wpLedvLtekykfskdeAkeIsdFLspMLqLD-----PrkRADAGGLVnH
1ia8a- ( 222 ) ----kekktylnpWkkIdsaPlaLLhkILven-----psaRitipdIkkD
1ir3a- (1223 ) -----mdggyldqpdnCperVtdLMrmCWqfn-----pkmRPtFleIV-n
1jvpp- ( 235 ) dykpsFpkwarqdfskvdedgrsLlsqMLhYd-----pnkRisAkaAlah
1koba- ( 264 ) ---rCdwefdedaFssVspeAkdFIknLLqke-----prkRltVhdAleh
1phk-- ( 243 ) ---sgnyqfgspeWddysdtVkdLVsrFLvvq-----pqkRytAeeAlaH
1pme-- ( 266 ) slphknkvpwnrlFpnadskAldLLdkMLtfN-----phkRieveqALah
1qpca- ( 454 ) -----ergyrMvrpdnCpeeLYqLMrlCWker-----pedRptFdyLr-s
1tkia- ( 234 ) ---naeytfdeeaFkeIsieAmdFVdrLLvke-----rksRmtAseAlqh
aaaaaaaaaa aaaaa
1a06-- ( 274 ) pWIagdtaldknihqsVseqIkknfakskwkqaFnataVvrh
1a6o-- ( 322 ) pYFqqVraaen
1apme- ( 295 ) kWFattdwiaIyqrkveApfiPkfkgpGdtsnfddyeeeeirvsinekcg
1b6cb- ( 491 ) tLsqLsqqe
1csn-- ( 277 ) LFskVLerlnttedenFdWnl
1f3mc- ( 519 ) qFLkiAkplssLtplIaaAkeat
1fgka- ( 753 ) dLdrival
1h8fa- ( 338 ) sFFdeLrdpnvkLpngrdtpaLfnFttqElssnpplatiLiPphariq
1howa- ( 704 ) pWLkdTlgmeeirVpdrelygsGsdIpGWfeev
1ia8a- ( 263 ) rWynkplkkgak
1ir3a- (1262 ) lLkddLhpsFpevSffhse
1jvpp- ( 284 ) pFFqdvtkpvPhlr
1koba- ( 306 ) pWLkgdhsnltsrIpssrYnkirqkikekyadwpapqpaIGrIAnFSSLr
1phk-- ( 285 ) pFFqqy
1pme-- ( 311 ) pYLeqyydpsdEpiAeapflpkeklkelIfeeTarfqpgyr
1qpca- ( 493 ) vLedffta
1tkia- ( 276 ) pWLkqkierVstkvirtlkHrryYhtLikkdlnMvvSAArIScggairsq
1a06-- ( )
1a6o-- ( )
1apme- ( 345 ) keFt
1b6cb- ( )
1csn-- ( )
1f3mc- ( )
1fgka- ( )
1h8fa- ( )
1howa- ( )
1ia8a- ( )
1ir3a- ( )
1jvpp- ( )
1koba- ( 356 ) khrpqeyqI
1phk-- ( )
1pme-- ( )
1qpca- ( )
1tkia- ( 326 ) kgvsv
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x