 Home
About pass2
Superfamily list
Align query
Useful tools
Search
Help
Lab page
|
Protein Alignments organised as Structural Superfamilies |
|
|
| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1acf-- | 1 | - | 125 | - | 125 | profilin i | (acanthamoeba castellanii) | 2.0 | 0.1838 |
| 1pne-- | 1 | - | 139 | - | 139 | profilin | cow (bos taurus) | 2.0 | 0.1838 |
| 3nul-- | 2 | - | 131 | - | 127 | profilin i | arabidopsis thaliana | 1.6 | 0.1808 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1acf-- ( 1 ) swqtyVdtnLvgtg--aVtqAAILGl--dGntwatsag--F-aVtpaqG
1pne-- ( 1 ) agwnayId-nLmadg--tCqDAAIVgykdspsvwaAvpgktFvnItpaeV
3nul-- ( 2 ) swqsyVddhLcdvegnhLtAAAILGq--dGsvwaqsak--FpqLkpqei
aaaaa bbbbbb bbbb aaaa
1acf-- ( 43 ) ttLagAFnnadaIragGFdLagvhYvTlrAdd-----rSIyGkk---g--
1pne-- ( 48 ) giLvg--kdrssFfvngltLGgqkCsVirdsLlqdgeftMdLrTkstgga
3nul-- ( 48 ) dgIkkdFeepgflaptgLfLggekyviqgeqg-----aVIrGkk---g--
aaa bbb bbb bbbb bbbbbb
1acf-- ( 83 ) -ssGVITVkTskAILVGvYnekiqpgtAanvVeklAdyLigqgf
1pne-- ( 96 ) ptfnITVTmTakTLVLLMGkegvhggmInkkCyemAshLrrsqy
3nul-- ( 89 ) -pGGVTIKkTnqALVFGfydep-tggqCnlVVerLGdyLiesel
bbbbbb bbbbbbb aaaaaaaaaaaaaaaa
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x