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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1b24a1 | 7 | A | 99 | A | 91 | i-dmoi | desulfurococcus mobilis | 2.2 | 0.218 |
| 1b24a2 | 100 | A | 178 | A | 78 | i-dmoi | desulfurococcus mobilis | 2.2 | 0.218 |
| 1dfaa2 | 181 | A | 298 | A | 86 | pi-scei endonuclease | saccharomyces cerevisiae | 2.00 | 0.210 |
| 1dfaa3 | 299 | A | 415 | A | 117 | pi-scei endonuclease | saccharomyces cerevisiae | 2.00 | 0.210 |
| 1dq3a3 | 129 | A | 226 | A | 98 | endonuclease | pyrococcus furiosus | 2.10 | 0.192 |
| 1dq3a4 | 227 | A | 335 | A | 109 | endonuclease | pyrococcus furiosus | 2.10 | 0.192 |
| 1g9za- | 2 | A | 153 | A | 152 | 5'-d(p*gp*ap*cp*gp*tp*tp*tp*tp*gp*c)-3' | chlamydomonas reinhardtii | 1.80 | 0.204 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1b24a1 ( 7 ) vsgisayllglIigdgglyklkyk---g---n
1b24a2 ( 100 ) lfnreqiafIkglYvaeGdk----------tlk-
1dfaa2 ( 181 ) pilyendhffdymqltiegpkVlayLLglWigdGls--------------
1dfaa3 ( 299 ) gvknIpsflstdn-----igtrEtfLAglIdsdGyVtd------------
1dq3a3 ( 129 ) pdgedykfifdywLagfIagdGcfdkyhsh---vkghe
1dq3a4 ( 227 ) Ippqilkeg-----knaVlsfIaglFdaeGhVsn------------
1g9za- ( 2 ) ntkYnkefLlyLAgfVdgdGsIiAqIkpnqsykfkh
aaaaaaaaaaaaaa bb
1b24a1 ( 33 ) rseyrVVItqksenlIkqhIaplqfLIdel-nvkskiqivkgd-------
1b24a2 ( 124 ) ----rLrIwnkn----kalLeiVsrwLnnl-gVrNtihlddh--------
1dfaa2 ( 222 ) ---drAtFsVd--srdtslmerVteyAekl-nlcaeYknt----------
1dfaa3 ( 332 ) ehgikATIktih----tsvrdgLvsLArsL-gLvVsvnaepAkvdmngtk
1dq3a3 ( 164 ) yiydrLrIydyr----ietFeiIndyLektfgrkysiqkdr---------
1dq3a4 ( 256 ) k--PGIeLgmvn----krlIedVThyLnal-gIkArireklrk-------
1g9za- ( 38 ) qlsLtFqVtqk--tqrrwfLdkLvdeI----gv-gyVrdrg---------
bbbbbb aaaaaaaaaaaaa bbb
1b24a1 ( 76 ) --tryeLrVsskkLyyyFanlerir
1b24a2 ( 157 ) rhgvyVLnIs-lrDrikFvhtil
1dfaa2 ( 283 ) ----------enpLwdAIvgLgflkd
1dfaa3 ( 377 ) hkisyAIyMsgg---dvLl-nVLskCa-gskkfrpaPa---aafare
1dq3a3 ( 201 ) --niyyIdIkarnITshYlkllegidn-------------------g
1dq3a4 ( 292 ) dgidyvLhVeeysSLlrFyelIGknLq-neekrekLekvLs--nhkg
1g9za- ( 72 ) --svSDYiLseikpLhnFLtqLqpfLklkqkQAnlVlkIIeqlpsAkesp
bbbbb aaaaaaa
1b24a1 ( )
1b24a2 ( )
1dfaa2 ( )
1dfaa3 ( )
1dq3a3 ( )
1dq3a4 ( )
1g9za- ( 120 ) dkFleVCtwVdqIaalndsktrkttsetVravld
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x