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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1hbna2 | 2 | A | 269 | A | 267 | methyl-coenzyme m reductase | methanobacterium | 1.16 | 0.124 |
| 1hbnb2 | 2 | B | 188 | B | 187 | methyl-coenzyme m reductase | methanobacterium | 1.16 | 0.124 |
| 1hbnc- | 2 | C | 248 | C | 247 | methyl-coenzyme m reductase | methanobacterium | 1.16 | 0.124 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1hbna2 ( 2 ) adkl-------finalkkkf---eespeekkttfytlggwkqSerktefV
1hbnb2 ( 2 )
1hbnc- ( 2 ) a---qyypGttkVAqnrrnFcnpeyeLeklreIs-----------dedVv
1hbna2 ( 42 ) naGkevaakrgipqynpdigtplGqrvlmpyqvstt--dtyvegddlhfv
1hbnb2 ( 2 ) akfedkvdlyddrgnlveeqvplealspl
1hbnc- ( 38 ) kILghrap--geeypsv--hppleemdep---------------------
1hbna2 ( 90 ) nnaamqqm---wDdir----RtViVGL-nhahavIek------------r
1hbnb2 ( 31 ) rnpaiksi---vqgik----rtVaVn-LegIenaLktAkvgGpackimgr
1hbnc- ( 63 ) edairemvepidGakaGDrvryIQFTD-SmyfAP----------------
aaaaa aaaaa bbbbb
1hbna2 ( 120 ) lgkevtpetIthYLetVnhAMpgaavvqehmvethpalVadSyVkVfTGn
1hbnb2 ( 73 ) eldldIvgnAesIAaaAkemIqvte-------------dddTnVell---
1hbnc- ( 96 ) ----Aq---pyVRsrAYlcryr------------------gAdAgtl---
aaaaaaaaaaa bbbb
1hbna2 ( 170 ) deiadeIdpafvidinkqfpedqAetlkaevgdgiwQvVrIPtivSrtc-
1hbnb2 ( 107 ) -------------------------------ggGkrAlVqVPsarfdvaa
1hbnc- ( 118 ) ---------------------------------sgrQiIeTrErdLe---
bbbb aaaaa
1hbna2 ( 219 ) dgatTsrwSAmqIgmSMisAYkQaageaAtgdFayaAkaevihmg-----
1hbnb2 ( 126 ) eysaAplvTAtAFvqAIinefdvsm--ydanMVkaAVLGry----pqsve
1hbnc- ( 132 ) ---kiSkeLLEtEF-FDPArSGVRGksvhGhslrldedgmMfdmlrRqiy
aaaaaaaa
1hbna2 ( 265 ) ---------------tylpv
1hbnb2 ( 170 ) ymgAnIatmldipqklegp
1hbnc- ( 178 ) nkdtgrVeMvknQiGdeLdepVdLgepldeetLmekTTiYrvdgeayrdD
1hbna2 ( )
1hbnb2 ( )
1hbnc- ( 228 ) veAveimqrihvlrsqggfnl
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x