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Protein Alignments organised as Structural Superfamilies


Superfamily :     Metal-binding domain
Class :    Alpha and beta proteins (a+b)
Fold :    Ferredoxin-like
Number of Members :     8
Average Size :     70


Alignment Matrices Tree Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1afj-- 1 - 72 - 72 merp shigella flexneri --- ---
1aw0-- 1 - 72 - 72 menkes copper-transporting atpase homo sapiens --- ---
1cc8a- 2 A 73 A 72 metallochaperone atx1 saccharomyces cerevisiae 1.02 0.145
1cpza- 1 A 68 A 68 copz enterococcus hirae --- ---
1fe0a- 2 A 67 A 66 copper transport protein atox1 homo sapiens 1.75 0.191
1fvqa- 1 A 72 A 72 copper-transporting atpase saccharomyces cerevisiae --- ---
1k0va- 1 A 73 A 73 copz bacillus subtilis --- ---
1qupa2 2 A 73 A 70 superoxide dismutase 1 copper chaperone saccharomyces cerevisiae 1.80 0.213

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1afj--  (   1 )       atqtVtLaVpgmtcaacPitVkkALskVe-gvskvdVgfekreAvVt
1aw0--  (   1 )       ltqeTvInIdgMtcnscvqsIegvIskkp-gVksIrVslansnGtVe
1cc8a-  (   2 )    a--eikhYqFnVv-MtcsgcsgaVnkvLtklepdVskidislekqlVdVy
1cpza-  (   1 )          aqeFsVkgmscnhcvarIeeaVgris-gVkkVkVqlkkekAvVk
1fe0a-  (   2 )         pkheFsVd-MtcggcaeaVsrvLnklg-gV-kydidlpnkkVcIe
1fvqa-  (   1 )        areViLaVhgMtcsactntIntqLralk-GVtkCdIslvtneCqVt
1k0va-  (   1 )        meqktLqvegmscqhcVkavetsVgeld-GVsavhVnLeagkVdVs
1qupa2  (   2 )    ttndtyeatYaip--hçençvndikaçLknvp-ginslnfdieqqi-sve
                         bbbbbb       aaaaaaaaaa     b bbbbb    bbbbb
 


    
1afj--  (  47 )    FddtkAsvqkLtkaTadagypSsvkq  
1aw0--  (  47 )    YdplltspetLrgaIedmgfdAtlsd  
1cc8a-  (  49 )    Tt---lpydfIlekIkktgkeVrsGkql
1cpza-  (  44 )    FdeanvqateIcqaInelgyqAevi   
1fe0a-  (  44 )    se---hsmdtLlatLkktgktVsylgl 
1fvqa-  (  46 )    ydn-eVtadsIkeiIedcgfdCeilrds
1k0va-  (  46 )    FdadkvsvkdIadaIedqGyDvakiegr
1qupa2  (  50 )    Ss---vapstIintLrnçgkdAiirga 
                   b      aaaaaaaaa     bbbb   
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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