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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1egaa2 | 183 | A | 295 | A | 113 | gtp-binding protein era | escherichia coli | 2.40 | 0.243 |
| 1fjgc1 | 2 | C | 106 | C | 105 | 30s ribosomal protein thx | thermus thermophilus | 3.00 | 0.221 |
| 1k0ra2 | 184 | A | 262 | A | 79 | nusa | mycobacterium tuberculosis | 1.70 | 0.248 |
| 1k0ra3 | 263 | A | 329 | A | 67 | nusa | mycobacterium tuberculosis | 1.70 | 0.248 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1egaa2 ( 183 ) d----------------------yitdrsqrfmAseIIrekLmrfLgae-
1fjgc1 ( 2 ) gnkihpigfrlgitrdwesrwyagkkqyrhllleDqrIrglLekeLy---
1k0ra2 ( 184 ) thpnlVrklFsleVpeia
1k0ra3 ( 263 ) dparfVanaLs-------
aaaaaaaaa
1egaa2 ( 210 ) --lpysvtVeIerfvsnerggydInGlIlVer----egqkkmVignkgak
1fjgc1 ( 49 ) --sAglarVdIeRaa------dnVaVtVhVa-------kpgvVigrgger
1k0ra2 ( 202 ) dgsVeIvaVaR-eag--------hrSkIaVrsnvaglnAkgaCiGpmgqr
1k0ra3 ( 274 ) --pakVvsVsvidqt-------araArVvVp-----dfqlslAigkegqn
bbbb b bbbbbb aaaaa 333aa
1egaa2 ( 254 ) iktIgieArkdMqemFeapVhLeLwVkvksgwadderalrsl
1fjgc1 ( 84 ) irvlreeLakltg------knVaLnVqev
1k0ra2 ( 243 ) vrnVmseLs-----------gEkIdIidyd-----------d
1k0ra3 ( 310 ) arlAarlT------------gwrIdIrgdap----------p
aaaaaaaa bbbbbb
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x