Home
About pass2
Superfamily list
Align query
Useful tools
Search
Help
Lab page
Protein Alignments organised as Structural Superfamilies


Superfamily :     GMP synthetase C-terminal dimerisation domain
Class :    Alpha and beta proteins (a+b)
Fold :    Alpha-lytic protease prodomain-like
Number of Members :     1
Average Size :     121


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1gpma3 405 A 525 A 121 gmp synthetase escherichia coli 2.2 0.207

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1gpma3  ( 405 )    gpglgvrVlgevkkeycdlLrrAdaiFieELrkadlydkVsqAFTVFlpv
                     3333       aaaaaaaaaaaaaaaaaaaa   333  bbbbbbbbb
 


    
1gpma3  ( 455 )    rsvGvmgdgrkyDwVVSLRAVetidfmtAhwAhLpydFlgrVsnrIineV
                   bbb        bbbbbbbbbbbbbb  bbbb    aaaaaaaaaaaaaa 
 


    
1gpma3  ( 505 )    nGISrVvydisgkppatiewe
                     bbbbbb             
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


  Enter Search key:




 
Your suggestions and further clarifications are most welcome.

-contact mini@ncbs.res.in