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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs | Structural Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1di2a- | 112 | A | 180 | A | 69 | rna (5'-r(*gp*gp*cp*gp*cp*gp*cp*gp*cp*c)-3') | xenopus laevis | 1.90 | 0.228 |
| 1pkp-2 | 4 | - | 77 | - | 74 | ribosomal protein s5 (prokaryotic) | (bacillus stearothermophilus) | 2.8 | 0.228 |
| 1qu6a1 | 1 | A | 90 | A | 90 | protein kinase pkr | homo sapiens | --- | --- |
| 1qu6a2 | 91 | A | 179 | A | 89 | protein kinase pkr | homo sapiens | --- | --- |
| 1stu-- | 1 | - | 68 | - | 68 | molecule | maternal effect protein staufen | --- | --- |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1di2a- ( 112 ) mpvgsLqelAvqkgwrlPeytvaqesgp--------
1pkp-2 ( 4 ) inpnkl------eLeervvaVnrvakvvkggr
1qu6a1 ( 1 ) gshmem-agdlsagffmeeLntyrqkqgvv-Lkyqelpnsgpp-------
1qu6a2 ( 91 ) lltttnsseglsmgnyiglInriaqkkrlt-Vnyeqcasgv---------
1stu-- ( 1 ) pisqVheiGikrnmt-VhFkvlreegp--------
aaaaaaaaaa bbbbbb
1di2a- ( 140 ) phkreftItCrVet-fvetGsgt--skqvAkrvAAekLltkf---kt
1pkp-2 ( 30 ) rlrFsAlVvVgdknghvgfGtgkaqevpeAirkAiedAkknL-ievpiv
1qu6a1 ( 42 ) -hdrrftfqViIdgrefpegegr--skkEAkNaAAklAveilnkekkavs
1qu6a2 ( 131 ) hgpegfhYkCkMgqkeySigtgs--tkqeAkqlAAklAylqIlseetgsg
1stu-- ( 27 ) ahmknfiTACivgs-ivteGeGn--gkkvSkkrAAekMlvel-q-kl
bbbbbbb bbbb aaaaaaaaaaaaaaa
1di2a- ( )
1pkp-2 ( )
1qu6a1 ( 89 ) pl
1qu6a2 ( 179 ) c
1stu-- ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x