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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1bvqa- | 2 | A | 140 | A | 139 | 4-hydroxybenzoyl coa thioesterase | pseudomonas sp. | 2.00 | 0.232 |
| 1c8ua1 | 2 | A | 115 | A | 114 | acyl-coa thioesterase ii | escherichia coli | 1.90 | 0.218 |
| 1c8ua2 | 116 | A | 286 | A | 171 | acyl-coa thioesterase ii | escherichia coli | 1.90 | 0.218 |
| 1mkaa- | 1 | A | 171 | A | 171 | beta-hydroxydecanoyl thiol ester dehydrase | escherichia coli | 2.0 | 0.163 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1bvqa- ( 2 )
1c8ua1 ( 2 ) sqalknllt
1c8ua2 ( 116 ) ehqktmpsApaPdglpsetqiaqslah-----llppvlkdkf-icdr---
1mkaa- ( 1 ) vdkresYtkedLlaSGrgelFga--------kgPqLpapnm
1bvqa- ( 2 ) arsitmqqrIe-----fgdCdp-agiVwypnY
1c8ua1 ( 11 ) llnLekie------------eglFrGqSedlg---------lrqVfggQV
1c8ua2 ( 157 ) pLeVrPvefhnplkghvaephrqVWIrAngsvp-------ddlrvHqylL
1mkaa- ( 34 ) LMMdrVvk-MtetggnfdkGyVeAeldInpdlwFFgchfigdpvMpgclG
bb bbbbbbb aaaa
1bvqa- ( 28 ) hrWLdaASrnYFikCgLppwrqTvvergIvgTpivscn-asfvctAsydd
1c8ua1 ( 40 ) vgQAlyAAketVpe----------------erlvhsfh-syflrpGdsk-
1c8ua2 ( 200 ) gyASdlnFLpVAlQphgigflep----gI-qiatidhs-mwfhrpFnLn-
1mkaa- ( 83 ) ldAMwqLVgFYLGWlgGeg-----------kgralgvgevkftgqVlpta
aaaaaaaaaa b bbbbbb bbb
1bvqa- ( 77 ) -vLtIeTcIkewrr---kSFVQrHsVsrttpggdvqlVMrAdeiRvFAmn
1c8ua1 ( 72 ) kpIiYdVetlrdgn---sfSaRrVaAiqn-----gkpIFyMtAsFqapea
1c8ua2 ( 243 ) ewLLYsVeStsass---arGfVrGeFYtq----dgvlVAsTvQeGvmrnh
1mkaa- ( 122 ) kkVtYrIhFkrivnrrlimGlAdGeVlvd-----grliYtAsdLkVGLfq
bbbbbbbbbb bbbbbbbbbb bbbbbbbbbbbbbb
1bvqa- ( 123 ) dgerlraieVpadYielC
1c8ua1 ( 114 ) ----------------gf
1c8ua2 ( 286 ) ----n
1mkaa- ( 167 ) dtsaf
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x