Home
About pass2
Superfamily list
Align query
Useful tools
Search
Help
Lab page
Protein Alignments organised as Structural Superfamilies


Superfamily :     CoA transferase
Class :    Alpha and beta proteins (a/b)
Fold :    CoA transferase
Number of Members :     2
Average Size :     288


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1poia- 2 A 319 A 317 glutaconate coenzyme a-transferase acidaminococcus fermentans 2.5 0.19
1poib- 3 B 262 B 260 glutaconate coenzyme a-transferase acidaminococcus fermentans 2.5 0.19

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1poia-  (   2 )         skvmtlkdAIakyVhsgdHIALGGfTtdRKPyAAVFEILrqgitd
1poib-  (   3 )    dytnytnkEMqAVTIAkqIkngqVVTVg----tglpLIGAsVAkrvyApd
                             aaaaaa       bbb          aaaaaaaaa     
 


    
1poia-  (  47 )    LTGLGGAAGGDWDMLIGngrVkAYInCyTANsgvTnvSrRfrkwfeagkL
1poib-  (  49 )    ChIIVe-----------sG-LmdCspveVPr---svgdlrFma-----hC
                    bbb                bbbb              aaaa        
 


    
1poia-  (  97 )    tMEdYsqdVIymMWhAAAlglpfLpvtlMqgsglTdewgIskevRktldk
1poib-  (  79 )    gc-iwpnvrFvgfEinEylh------------------------------
                   bb b  aaaaaaaaaaaaa                               
 


    
1poia-  ( 147 )    VpddKfkyidnpfkpgekvVaVpvpqVdVAIIHAQqASpdGtVrIwg---
1poib-  (  98 )    -------------------kan----rLiAFiggaQIdPyGnVNsTSigd
                                               bbbb   bb     bb      
 


    
1poia-  ( 194 )    ---------gkfQDvdIAeaAkyTIVTCeeiisdeeIrrdptkndIp---
1poib-  ( 125 )    yhhpktrftgsggangIAtyS-nTIImMqHe--krrFmnkIdyvTSpGwi
                                aaaaaaa   bbbb                       
 


    
1poia-  ( 233 )    ------------gm-cVdAVVlApyGAHPS-----qCyglYdyDnpfLkv
1poib-  ( 172 )    dGpgGRerlglpgdvGPqLVVT-dkGiLkFdektkrMyLaAyYptssped
                                     bbbb                         aaa
 


    
1poia-  ( 265 )    ydkvSkt--------------qedFdaFCkewVfdlkdhdeYlnkLgatr
1poib-  ( 221 )    VlenTgFdLdvskAveleaPdpavIklIReeIDpg---qafIqvp     
                   aaa                  aaaaaaaaa                    
 


    
1poia-  ( 301 )    linlkvvpglgyhidmtke
1poib-  (     )                       
                                      
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


  Enter Search key:




 
Your suggestions and further clarifications are most welcome.

-contact mini@ncbs.res.in