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Protein Alignments organised as Structural Superfamilies



Superfamily :     PRTase-like
Class :    Alpha and beta proteins (a/b)
Fold :    PRTase-like
Number of Members :     14
Average Size :     194


Alignment Matrices Tree Genome Distribution HMM Interacting Motifs Structural Motifs

Protein
Code
Start
Residue
Start
Chain
End
Residue
End
Chain
Domain
Size
Name Source Resolution R-factor
1a3c-- 3 - 180 - 166 pyrimidine operon regulatory protein pyrr bacillus subtilis 1.6 0.192
1bd3a- 21 A 244 A 224 uracil phosphoribosyltransferase toxoplasma gondii 1.93 0.186
1bzya- 4 A 217 A 214 hypoxanthine-guanine phosphoribosyltransferas homo sapiens 2.0 0.190
1dkra1 8 A 166 A 157 phosphoribosyl pyrophosphate synthetase bacillus subtilis 2.30 0.180
1dkra2 167 A 316 A 141 phosphoribosyl pyrophosphate synthetase bacillus subtilis 2.30 0.180
1dqna- 1 A 230 A 230 guanine phosphoribosyltransferase giardia lamblia 1.75 0.204
1ecfa1 250 A 492 A 243 glutamine phosphoribosylpyrophosphate escherichia coli 2.0 0.175
1fsga- 0 A 230 A 233 hypoxanthine-guanine phosphoribosyltransferas toxoplasma gondii 1.05 0.122
1g2qa- 1 A 178 A 178 adenine phosphoribosyltransferase 1 saccharomyces cerevisiae 1.50 0.199
1hgxa- 7 A 179 A 164 hypoxanthine-guanine-xanthine tritrichomonas foetus 1.9 0.175
1nula- 3 A 152 A 142 xanthine-guanine phosphoribosyltransferase escherichia coli 1.8 0.192
1oroa- 1 A 213 A 213 orotate phosphoribosyltransferase escherichia coli 2.40 0.183
1qb7a- 2 A 237 A 236 adenine phosphoribosyltransferase leishmania donovani 1.50 0.200
1tc1a- 5 A 188 A 175 hypoxanthine phosphoribosyltransferase trypanosoma cruzi 1.41 0.198

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment)



 

1a3c-- ( 3 )

1bd3a- ( 21 ) qe-esilqdIitrfpnVvl

1bzya- ( 4 ) spGvvisddepGydl-dlf----------cip

1dkra1 ( 8 )

1dkra2 ( 167 )

1dqna- ( 1 ) miCsvtgkpvkdvlstffkdr

1ecfa1 ( 250 )

1fsga- ( 0A) gshmAskpiedYGkGkgriePmyipdn-tfynA-ddf----------lvp

1g2qa- ( 1 ) mp-iasyaqeLklaLhqyp

1hgxa- ( 7 )

1nula- ( 3 )

1oroa- ( 1 ) mkpyqrqFIefAlskqVLkF

1qb7a- ( 2 ) pfkevspnsflLdd-shaLSqlLkksYrwys

1tc1a- ( 5 )



1a3c-- ( 3 ) qkaviLd------------------eqaIrrALt

1bd3a- ( 39 ) MkqtaqLraMMtiIr-dketp---kee-------------FvfyAdrLIr

1bzya- ( 25 ) -------nhYa--eD-LerVFIp------------------hglImdrTe

1dkra1 ( 8 )

1dkra2 ( 167 )

1dqna- ( 22 ) ndVl-----esevkk--FhLLAT------------------feECkaLAa

1ecfa1 ( 250 ) npcLFeYVyfarpdsfidkIsVysARvnMGt

1fsga- ( 36 ) -------phCk--py-IdkILLp------------------gglVkdrVe

1g2qa- ( 19 ) -------nfps--eg-IlFedFlpIfr-------------npglfqkLId

1hgxa- ( 7 ) m--dd-Lervlyn------------------qddIqkrIr

1nula- ( 3 ) ekyiVtwdmLqihAr

1oroa- ( 21 ) geftLks------grkSPYfFnAglFn-------------tgrDlalLGr

1qb7a- ( 32 ) -------pvfSprnv-prfAdvssIte-------------speTlkaIrd

1tc1a- ( 5 ) y--ef-Aekilft------------------eeeIrtrIk

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1a3c-- ( 19 ) rIAheMiernk----------------------ciLVGIktrGiyLAkrL

1bd3a- ( 72 ) lLIeeAlneLpfqkkevttpldvsyhgvsfyskiCGVSIvraGeSMesgL

1bzya- ( 47 ) rLArdVMkeMgg-------------------hhIvALCVlkgGykFfadL

1dkra1 ( 8 ) nlkIFsL-nSnpelAkei

1dkra2 ( 167 ) diVIVSPdhgGvtrArkl

1dqna- ( 47 ) DTArrMneyYkdva-----------------epVTLVALltgAylYAslL

1ecfa1 ( 281 ) kLGekIarewe------------------dldIdVVIPIpetScdIAleI

1fsga- ( 58 ) kLAydIhrtYfg-------------------eeLhIICIlkgSrgFFnlL

1g2qa- ( 46 ) AFklhLeeafpe------------------vkidyIVGLesrGflFGptL

1hgxa- ( 26 ) eLAaeLtefYed-------------------knPVMICvltgAvfFYtdL

1nula- ( 18 ) kLAsrLm---------------------pseqwkGIIAvsrgGlvPGalL

1oroa- ( 52 ) fYAeALvdsg--------------------iefdLLFGpAykGipiAttT

1qb7a- ( 61 ) fLVqrYrams--------------------paPthILGFdarGflFGpmI

1tc1a- ( 24 ) evAkrIaddYkgk------------gLrpyvnPLVLISVlkGSfmFTadL

aaaaaaaa bbbbb aaaaaaa



1a3c-- ( 51 ) aerieqieg--------npvtvGeIdItl-y--------------rn---

1bd3a- ( 122 ) ravcr-------------gvriGkIlIqr-de-----------------t

1bzya- ( 78 ) ldyIkalnrnsdrsI---pMtvdfIrLks-y---c-------ndqst---

1dkra1 ( 25 ) Adivgv------------qlGkcsvtrfs---------------------

1dkra2 ( 185 ) Adrl--------------kApiAiIdk-----------------------

1dqna- ( 80 ) tvhLt------------FpytlhfVkvssykgt-----------------

1ecfa1 ( 313 ) Arilg------------kpyrqGFvknryvgrtfimpgqqlrrksvr---

1fsga- ( 89 ) idyLatiqkysgressvppffehyVrLkS-y---q-------ndnst---

1g2qa- ( 78 ) Alalg--------------vgfvpVrkag-k---LpgeCfkatyeke---

1hgxa- ( 57 ) lkhLd------------fqlepDyIiCsS-l-------------------

1nula- ( 47 ) areLgir-------------hvdtVcIs----------------------

1oroa- ( 82 ) avALaehhd--------ldlpyCfNrkea-kd---------------hge

1qb7a- ( 91 ) Avele--------------ipfvlMrk----adknagllirSepyekeyk

1tc1a- ( 62 ) craLcdf---------nvpvrmefIcvss---------------------

aaaa bbbbb



1a3c-- ( 83 ) -dePlvkgadI-pv-dItdq-kVILVDdvLy----tGrtVrAGmdaLvdv

1bd3a- ( 141 ) taepkliyekL--padIrer-wVMLLdPmCa----tAGsVCkAIeVLlrl

1bzya- ( 111 ) -gdIkvigg-d-dLstLtgk-nVLIVEdiId----tgktMqtLlslVrqy

1dkra1 ( 42 ) -dgevqInIee----sIrgc-dCyIIQsTsdpvnehimELliMVdaLkra

1dkra2 ( 198 ) -----rmnivg----nIegk-tAiLiddiId----tAgtItlAAnaLven

1dqna- ( 101 ) --rqesVvFdeedlkqLkekreVVLIdeyVd----sGhtIfSIQeqIk--

1ecfa1 ( 348 ) ----rkLnan---raeFrdk-nVLLVddSIv----rGttSeqIIemArea

1fsga- ( 125 ) -gqLtv-ls-d-dlsiFrdk-hVLIVedivd----tgftLteFGerLkav

1g2qa- ( 107 ) -ygsdlfeIqk-naIp-ags-nVIIVdDiIa----tgGsAaAAgeLVeqL

1hgxa- ( 84 ) ----tiskd-L-kt-nIegr-hVLVVediId----tGltMyqLlnnLqmr

1nula- ( 62 ) --slkvlkrAeg------dGegfIVIddlVd----tggtAvaIremYp--

1oroa- ( 108 ) ggnlvgs--------aLq-g-rVMLVddvIt----aGtaIreSmeiIqan

1qb7a- ( 123 ) eaapevMTIry-gSIg-kgs-rVVLIdDvla----tGgtAlSGLqLVeas

1tc1a- ( 82 ) --yvrmlld-T-rh-sIegh-hVLIVediVd----tAltLnyLyhmYftr

bbbb bbbbbb bb aaaaaaaaaaa



1a3c-- ( 125 ) grPs---siqLAVLVdRg---------------hrelpi----------r

1bd3a- ( 184 ) -gVkeer-IIFVNILAAp---------------qGIerVFkeyp----kV

1bzya- ( 153 ) -nPk---mvkVASLLvKrTp-------------rsv-gy----------k

1dkra1 ( 86 ) -sAk---tINIvIpyYgyArqDrks-repitAklFAnlLetagAt-----

1dkra2 ( 243 ) -gAk---eVyAcCthPvLs-------------gpAVerIn------nStI

1dqna- ( 143 ) -------hAkICSCFVkdvdaIk--------khs-----------aLadT

1ecfa1 ( 386 ) -gAk---kVYLASAAPeIrfPNvygidMpsateLiAhgrevdeIrqiIgA

1fsga- ( 166 ) -gPk---SMrIATLVeKrTd-------------rsn-sl----------k

1g2qa- ( 149 ) -eAn---lleYNFVMeldfl-------------kgrskL---------na

1hgxa- ( 122 ) -kPa---sLkVCTLCdkdig-------------kkaydV----------p

1nula- ( 106 ) -------kAhFVTIFAkpaGrplVddyVvdIpq-----------------

1oroa- ( 144 ) -gAt---LaGVLISLdrqergrg--------eiSaiqeVerdy-----nC

1qb7a- ( 166 ) -dAv---VvEMVSILsipfl-------------kAaekIhstansrykdi

1tc1a- ( 131 ) -rPa---sLkTVVLLdkr-e-------------grrvpf----------s

bbbbbbbbb



1a3c-- ( 147 ) AdYiGkn---ipTsk-s--ekVmVq------Ldevd---qnDlVAiy--e

1bd3a- ( 213 ) rMVTAaVDi-cLnsr-y--yIvpGI------gdFgdryfgtm

1bzya- ( 175 ) PdFvGFe---IP--d-k--fVVGYA------ldYneyFrdLnhVCvI--s

1dkra1 ( 128 ) rViAldLhap--qIqgfFdipidhl------------------------m

1dkra2 ( 270 ) keLvVtnsiklpe--------------------------ekkIerfkqls

1dqna- ( 167 ) kMFyGyt--pMpk---gS-wLIGFG------lddnglrrgWahLFDinLs

1ecfa1 ( 432 ) dgLIFQdlnd--Lid-AVr---aenpdiqqFecSVFnGvyvtkdVd----

1fsga- ( 188 ) GDfVGFS---Ie--d-v--wIVGcC------YdFnemFrdFdhVAvL--s

1g2qa- ( 173 ) pvftLL

1hgxa- ( 145 ) idycGfv---Ve--n-r--yIIGYG------fdfhnkyrnlpvIGIl--k

1nula- ( 132 ) -dTwieQPwdmg--------------------------------------

1oroa- ( 177 ) kVisIItLkd--LIa-YL-eek---pemaehlaaVkaYreefGv

1qb7a- ( 199 ) kFIsLLsddaLteeN-c--gdsk----------------nytgprvl--s

1tc1a- ( 153 ) AdyvVAn---Ip--n-A--fVIGYG------LdyddtyrelrdIVVl--r

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1a3c-- ( 180 ) n

1bd3a- ( )

1bzya- ( 209 ) etGkakyka

1dkra1 ( 152 ) gvpilgeyfegknle

1dkra2 ( 294 ) vgpllaeaiirvhe---qqsvsylfs

1dqna- ( 205 ) esevteFrrrLtehIkglningvnry

1ecfa1 ( 472 ) qgyldfldtlrnddakavqrq

1fsga- ( 222 ) daArkkfek

1g2qa- ( )

1hgxa- ( 179 ) e

1nula- ( 143 ) ----------------vvfvppisgr

1oroa- ( )

1qb7a- ( 228 ) cgdvlaehph

1tc1a- ( 187 ) pe






Key

solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x



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