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Protein Alignments organised as Structural Superfamilies


Superfamily :     Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Class :    Alpha and beta proteins (a/b)
Fold :    Phosphorylase/hydrolase-like
Number of Members :     2
Average Size :     215


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1a2za- 1 A 220 A 220 pyrrolidone carboxyl peptidase thermococcus litoralis 1.73 0.22
1auga- 1 A 210 A 210 pyroglutamyl peptidase-1 bacillus amyloliquefaciens 2.0 0.1966

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1a2za-  (   1 )     mkkVLITGFepfggdskNPTeqIAkyFdrkqignAmVyGrvLPvSVkrA
1auga-  (   1 )    mekkVLLTGFdpfggetvnPSweAVkrlngaaegpAsIvSeqVptVFykS
                     bbbbbbbb         aaaaaaa     bb  bbbbbbbb     aa
 


    
1a2za-  (  50 )    tieLkryLeeikPeIVINLGLaptysnItVEriAvNiIdAripDndgyqP
1auga-  (  51 )    lavLreAIkkhqPdIIICVGqaggrmqItPErvAinlNeAripDnegnqp
                   aaaaaaaaaaa   bbbbbbb       bb  bbb               
 


    
1a2za-  ( 100 )    idekIeedAplaymAtLPVrAITktLrdngIpAtIsysAgtyLcNyVMFk
1auga-  ( 101 )    vgedIsqggpaaywTgLPIkrIveeIkkegIpAavsytAgtfVcNHLFYg
                              bbb    aaaaaaaaaa              aaaaaaaa
 


    
1a2za-  ( 150 )    TLhfskiegyPlkAGFIHVPYTpdqVvnkffllgknTpsmcleaEikAIe
1auga-  ( 151 )    LmdeisrhhphIrGGFIHIPyIpeqtlqk------sapslsldhItkALk
                   aaaaaaaa    bbbbbbb   333                aaaaaaaaa
 


    
1a2za-  ( 200 )    lAVkvSLdYlekdrddikipl
1auga-  ( 195 )    iAAvtAAvhe----ddietg 
                   aaaaaaaa             
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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