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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs | Structural Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1a9xa3 | 1 | A | 127 | A | 127 | carbamoyl phosphate synthetase | escherichia coli | 1.8 | 0.191 |
| 1auva1 | 112 | A | 213 | A | 100 | synapsin ia | bos taurus | 2.15 | 0.199 |
| 1b6ra2 | 1 | A | 78 | A | 78 | n5-carboxyaminoimidazole ribonucleotide | escherichia coli | 2.10 | 0.1970 |
| 1dv1a2 | 2 | A | 114 | A | 113 | biotin carboxylase | escherichia coli | 1.90 | 0.1820 |
| 1e4ea1 | 2 | A | 131 | A | 130 | vancomycin/teicoplanin a-type resistance prot | enterococcus faecium | 2.5 | 0.183 |
| 1ehia1 | 3 | A | 134 | A | 132 | d-alanine | d-lactate ligase | 2.38 | 0.184 |
| 1eyza2 | 2 | A | 112 | A | 111 | phosphoribosylglycinamide formyltransferase 2 | escherichia coli | 1.75 | 0.1870 |
| 1gsa-1 | 1 | - | 122 | - | 122 | glutathione synthetase | escherichia coli | 2.0 | 0.188 |
| 1gsoa2 | 1 | A | 2 | A | 2 | glycinamide ribonucleotide synthetase | escherichia coli | 1.6 | 0.209 |
| 1iow-1 | 1 | - | 96 | - | 96 | d-ala\ | d-ala ligase | 1.9 | 0.158 |
| 2hgsa1 | 202 | A | 303 | A | 102 | glutathione synthetase | homo sapiens | 2.10 | 0.218 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1a9xa3 ( 1 ) mpkrtdIksILILGaGpivigqacefdysGaqaCkalr------ee
1auva1 ( 112 ) aarvlLVId-------------ephtdwakyfkgkkihgei
1b6ra2 ( 1 ) mkqvCVLgn-----------gqlGrmlrqage------pl
1dv1a2 ( 2 ) ldkIVIA---------------NrgeiAlriLra--ckel
1e4ea1 ( 2 ) nrikVAILFGGcsee--hdvSvksAieiaanin------ke
1ehia1 ( 3 ) kkrVALIFGGnsse--hdvSkrsAqnfynaie-----atg
1eyza2 ( 2 ) tllgtalrpaAtrvMLLGS-----------gelgkevAiecq------rl
1gsa-1 ( 1 ) miklGIVMdpIan---inIkkdssFamLleaq------rr
1iow-1 ( 1 ) mtdkiAVLlGgtsae--revSlnsGaavlaglr------eg
2hgsa1 ( 202 ) pnalvLLIAqeke------rnifdQraienell------ar
bbbbb aaaaaaaaaaa
1a9xa3 ( 41 ) gyrVINVNsnpaTiMTdpemAda----------------tyiepIhwevV
1auva1 ( 140 ) dikVeqaeFsdLnlvAhangg-------------------fsVdevlrng
1b6ra2 ( 24 ) giaVwpvglda---------------------------------------
1dv1a2 ( 25 ) gikTVAVhSsadrdlkHVllAdetvcI--------gpapsvkSYlnipaI
1e4ea1 ( 35 ) kyeplYIGitksgvwkmÇekPcaeWenenÇ--ysAvLSpdkkmhGLlVkk
1ehia1 ( 36 ) kyeIiVFAIAqngfFLdtesSkkILaledeqpiVdafmktvdasdplari
1eyza2 ( 35 ) gvEVIAVdryadApAMhvAhrs-----------------hvinMldgdAL
1gsa-1 ( 32 ) gyeLHYMemgdLylingeArAhTrtL----------nVkqnyeewfsfvg
1iow-1 ( 34 ) gidAypVdpkev-------------------------------------d
2hgsa1 ( 231 ) nihVirrtFedIsekGs----------------------------ldqdr
bbbbb
1a9xa3 ( 75 ) rkIIekerPdAVlPtmGg------qtAlncAleLerqgVleefgVtMiga
1auva1 ( 172 ) vkvvrslkPdfVlirqha-----fsarngdyrslviglqyAgIps
1b6ra2 ( 35 ) epaavpfqqSvItAeier------wpetaLTrqLarhpaFvnrdvf
1dv1a2 ( 67 ) isAAeitgAvAIhPGygf-----lsenanFAeqVersgfiFigpkaeti
1e4ea1 ( 83 ) nheyeinhVdvAfsaLhgk----sGedGsIqglFelSgIpfvgcdiqss
1ehia1 ( 86 ) hAlksagdFdiFfpVVhgn----lGedGtLQglFklldkpyvgaplrgh
1eyza2 ( 68 ) rrVVelekPhyIvPei----------eaIatdmLiqLeeeglnVvpcAra
1gsa-1 ( 72 ) eqdlpLadLdvIlMrkdpp---fdtefiyATyiLerAeekgTlIvnkPqs
1iow-1 ( 47 ) vtqLksmgFqkVfIaLhgr----gGedGtlQgmLelmgLpytgsgvmas
2hgsa1 ( 253 ) rLfVdgqeIavVyFrDGymprQYslqNweARllLerShAaKcpdiatq
bbbb aaaaaaaa
1a9xa3 ( 119 ) tadai
1auva1 ( )
1b6ra2 ( )
1dv1a2 ( )
1e4ea1 ( )
1ehia1 ( )
1eyza2 ( 108 ) t
1gsa-1 ( 119 ) lrd
1iow-1 ( )
2hgsa1 ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x