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Protein Alignments organised as Structural Superfamilies


Superfamily :     Toll/Interleukin receptor TIR domain
Class :    Alpha and beta proteins (a/b)
Fold :    Flavodoxin-like
Number of Members :     1
Average Size :     159


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1fyva- 625 A 785 A 159 toll-like receptor 1 homo sapiens 2.90 0.254

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1fyva-  ( 625 )    nipleelqrnlqfhAFISySghdsfwVkneLLpnLekeg qIÇLhernfv
                               bbbbbb  333aaaaaa aaaaaa     bb       
 


    
1fyva-  ( 675 )    pgksivenIitÇIekSYKSIFVLSpnFVqseWchYelyFahhnlFhegsn
                       aaaaaaaaaaabbbbbbbb aaaaaa  aaaaaa            
 


    
1fyva-  ( 725 )    sLiLIlLepipqysipssyhkLksLarrtylewpkekskrglFwanLraa
                    bbbbb     333     aaaaa      bb    333  aaaaaaaaa
 


    
1fyva-  ( 776 )    iniklteqak
                   aa        
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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