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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1a04a2 | 5 | A | 142 | A | 138 | nitrate/nitrite response regulator protein na | escherichia coli | 2.2 | 0.211 |
| 1a2oa1 | 1 | A | 140 | A | 140 | cheb methylesterase | salmonella typhimurium | 2.4 | 0.222 |
| 1b00a- | 2 | A | 123 | A | 122 | phosphate regulon transcriptional regulatory | escherichia coli | 1.88 | 0.210 |
| 1dbwa- | 1 | A | 123 | A | 123 | transcriptional regulatory protein fixj | rhizobium meliloti | 1.6 | 0.187 |
| 1dcfa- | 1 | A | 134 | A | 133 | etr1 protein | arabidopsis thaliana | 2.50 | 0.222 |
| 1dz3a- | 2 | A | 124 | A | 123 | stage 0 sporulation protein a | bacillus stearothermophilus | 1.65 | 0.20774 |
| 1jbea- | 2 | A | 129 | A | 126 | chemotaxis protein chey | escherichia coli | 1.08 | 0.114 |
| 1kgsa2 | 2 | A | 123 | A | 115 | dna binding response regulator d | thermotoga maritima | 1.50 | 0.179 |
| 1nat-- | 3 | - | 121 | - | 119 | sporulation response regulatory protein | bacillus subtilis | 2.45 | 0.181 |
| 1ntr-- | 1 | - | 124 | - | 124 | ntrc receiver domain (ntrc(1-124)) (nmr, 20 structures) | (salmonella typhimurium), expression system | --- | --- |
| 1qkka- | 5 | A | 143 | A | 139 | c4-dicarboxylate transport transcriptional | sinorhizobium meliloti | 1.7 | 0.218 |
| 1qo0d- | 2 | D | 190 | D | 189 | amir | pseudomonas aeruginosa | 2.25 | 0.186 |
| 1tmy-- | 2 | - | 119 | - | 118 | chey protein | thermotoga maritima | 1.9 | 0.186 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1a04a2 ( 5 ) epatILLIDdhpmlrtgVkqlIsmapdItvvgeAsnGeqGi
1a2oa1 ( 1 ) m---skIrVLSVddsalmrqimteIInshsdMeMvatApdPlvAr
1b00a- ( 2 ) arrILVVEdeapiremVcfvLeqn-gfqP-veAedydsAv
1dbwa- ( 1 ) m---qdytVHIVDdeepvrkslAfmLtmn-gfaV-kmHqsAeaFl
1dcfa- ( 1 ) hmsnFtglkVLVMDengvsrmvTkglLvhL-gCeV-ttVssneeCl
1dz3a- ( 2 ) sikVCIADdnrelVslldeyissqpdmeVigtAynGqdCl
1jbea- ( 2 ) ad---kelkFLVVDdfstmrriVrnlLkel-gFnnVeeAedGvdAl
1kgsa2 ( 2 ) nvrVLVVEderdlAdlITeaLkk--eftV-dvcydGeeGy
1nat-- ( 3 ) nekILIVDdqygirilLnevFnke-gYqT-fqAanGlqAl
1ntr-- ( 1 ) m---qrGiVwVVDddssirwvleraLaga-gltC-tTfenGneVL
1qkka- ( 5 ) psVfLIDddrdlrkaMqqtLela-gFtV-ssfasAteAl
1qo0d- ( 2 ) sansllgslrelqVlVLnppgevSdaLvlqLiri-gCsV-rqcwpPpe--
1tmy-- ( 2 ) gkrVLIVDdaafmrmmLkdiItka-gYeVageAtngreAv
bbbbb aaaaaaaaaaaaa bb bbb aaaaa
1a04a2 ( 46 ) elAesldPdLILLDlnmpgmngleTLdkLre--ksL--sgrIVVFSvs--
1a2oa1 ( 43 ) dlikkfnPdVLTLdVeMprmdGldfLeklmrl---r--pmpVVMvssltg
1b00a- ( 40 ) nqlnepwPdLILLDwmLpggsGiqFIkhLkresmtr--diPVVMLTar--
1dbwa- ( 41 ) afApdVrnGVLVTdLrmpdmsGveLLrnLgd--lki--nIpSIVITgh--
1dcfa- ( 45 ) rvVsh-eHkVVFMdVcmpgvenYqIAlrIhekFtqrhqrPlLVALSgntd
1dz3a- ( 42 ) qmLeekrPdiLlLdIiMphldGlaVLerIragfeh---qPnViMLTaf--
1jbea- ( 44 ) nkLqaggYgFVISDwnMpnmdGleLLktIra--ams--alpVLMVTae--
1kgsa2 ( 42 ) --alnepFdVVILdi-LpvhdGweilksre---sgv--ntpvL-LTa---
1nat-- ( 41 ) diVtkerPdLVLLDMkIpgmdGieILkrMkv--ide--nIrVIIMTay--
1ntr-- ( 41 ) aaLaskTpdVLLSdirmpgmdgLalLkqIkq--rHp--mlpViImtAh--
1qkka- ( 42 ) agLsadfaGIVISdIrMpgmdGlaLFrkIla--lDp--dLPMILVTgh--
1qo0d- ( 48 ) --afdvpvdVVFTsIfqn--rhhdeIaaLlaa---gtprtTLVALVeyes
1tmy-- ( 41 ) ekYkelkPdIVTMdItmpemngidAIkeImk--idp--nAkIIVCSam--
a bbbbb aaaaaaaaaa bbbbb
1a04a2 ( 90 ) nheedvvtALk--rgAdgYllkd-----me------pedllkaLhqAAag
1a2oa1 ( 88 ) kgsevtlrAle--lgAidfVtKpqlgireg--mlaysemIAekVrtAAra
1b00a- ( 86 ) g--eeedrVrgleTgAddyItkp-----fs------pkeLvarIkaVmrr
1dbwa- ( 85 ) gdvpmaveAmk--agAvdfiekp-----fe------dtvIieaIerASeh
1dcfa- ( 95 ) --ksTkekcms--fgLdgvLlkp-----Vs------ldnIrdvLSdllep
1dz3a- ( 87 ) gqedvTkkAve--lgAsyfilkp-----fd------menlahhirqvyg-
1jbea- ( 90 ) akkeniiaAaq--agAsgyvvkp-----Ft------aatLeekLnkIfek
1kgsa2 ( 83 ) --lsdveyrvkglngaddyLpkp-----fd------lreLiarVraLirr
1nat-- ( 85 ) geldmiqeSke--lgAlthfakp-----fd------ideIrdaVkkylpl
1ntr-- ( 85 ) sDldaAvsAyq--qGaFdylpkp-----fd------ideaValVeraish
1qkka- ( 86 ) gdipmAvqAiq--dgAydfiakp-----fa------adrLvqsArrAeek
1qo0d- ( 91 ) --pavlsqiie--LeChgvItqpLdahrVlpvLvsArriSeemaklkqkt
1tmy-- ( 85 ) gqqamvieAik--agAkdfivkp-----Fq------psrVveALnkvs
aaaaaaaaa bbbb aaaaaaaaaaaa
1a04a2 ( 127 ) emvlsealtpvlaasl
1a2oa1 ( 134 ) riaahkp
1b00a- ( 123 ) i
1dbwa- ( 122 ) lv
1dcfa- ( 130 ) rvlye
1dz3a- ( 123 ) -kt
1jbea- ( 127 ) lgm
1kgsa2 ( 121 ) kse
1nat-- ( )
1ntr-- ( 122 ) yqe
1qkka- ( 123 ) Rrlvmenrslrraaeaasegl
1qo0d- ( 137 ) eqlqdriagqarinqAkvlLmqrhgwdereAhqhLsreAmkrrepilkiA
1tmy-- ( )
1a04a2 ( )
1a2oa1 ( )
1b00a- ( )
1dbwa- ( )
1dcfa- ( )
1dz3a- ( )
1jbea- ( )
1kgsa2 ( )
1nat-- ( )
1ntr-- ( )
1qkka- ( )
1qo0d- ( 187 ) qell
1tmy-- ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x