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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1cdza- | 1 | A | 96 | A | 96 | dna-repair protein xrcc1 | homo sapiens | 3.2 | 0.224 |
| 1dgtb3 | 2582 | B | 2660 | B | 79 | dna ligase | thermus filiformis | 2.90 | 0.254 |
| 1in1a- | 835 | A | 922 | A | 88 | dna ligase iii | escherichia coli | --- | --- |
| 1jnxx1 | 1649 | X | 1757 | X | 108 | breast cancer type 1 susceptibility protein | homo sapiens | 2.50 | 0.259 |
| 1jnxx2 | 1758 | X | 1859 | X | 99 | breast cancer type 1 susceptibility protein | homo sapiens | 2.50 | 0.259 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1cdza- ( 1 ) elp-dfFqgkhFfLyGeFpgderrkLiryVtaFnGeledy
1dgtb3 (2582 ) eevsdllsgltfvltgel-----srpreevkallgrlgak
1in1a- ( 835 ) gsadetLcqtkvlldIFtgVrLyLppstp--dfsrLrrYFvaFdGdLvqe
1jnxx1 (1649 ) rmsMVvs-gLtpeefmlVykFArkhhItLtn-
1jnxx2 (1758 ) rkiFrgleICCygpFtnmptdqLewmVqlcgAsvvke
aaaaaaaaaa
1cdza- ( 40 ) ---msd--rVqfVITaq------------------ewdpsFeealmdnps
1dgtb3 (2617 ) ---vtdsvsrktsylvvgenpgsklekaralgvAvlteeefwrflke
1in1a- ( 883 ) ---fdMt-sAthVLg----------------------------srdkNpa
1jnxx1 (1679 ) --lite--eTtHVVMkTd-------------afvCertlkYflGia--gg
1jnxx2 (1795 ) lssftlgtgvhpIVVVqp-----------------dawtgfhaIgqmc-e
bb
1cdza- ( 67 ) LaFVrprWIysCnekqkllphqlygVvpqa
1dgtb3 ( )
1in1a- ( 901 ) AqqVspeWIwaCIrkrrlvapc
1jnxx1 (1711 ) kwVVSyfWVtqSikerkmlnehdfeVrGDvvngrnhqgPkraresqd
1jnxx2 (1830 ) ApVVtreWVldSvalyqcqeldtylipqip
bb aaaaaaa
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x