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Protein Alignments organised as Structural Superfamilies


Superfamily :     RuBisCo, C-terminal domain
Class :    Alpha and beta proteins (a/b)
Fold :    TIM beta/alpha-barrel
Number of Members :     3
Average Size :     311


Alignment Matrices Tree Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1geha1 137 A 443 A 302 ribulose-1,5-bisphosphate carboxylase/oxygena thermococcus kodakaraensis 2.80 0.224
1gk8a1 150 A 475 A 322 ribulose-1,5 bisphosphate carboxylase/oxygena chlamydomonas reinhardtii 1.4 0.149
5ruba1 138 A 457 A 311 rubisco (ribulose-1,5-bisphosphate (rhodospirillum $rubrum) expressed in (escherichia $coli 1.7 0.149

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1geha1  ( 137 )    dGPafGiegVrkmLeIk---drPIYGVVPkpkvgysPeeFeklAydLLsn
1gk8a1  ( 150 )      GPhGiqvErdkLnky---grGLLGCtIkpklglsaknYGraVyeCLrg
5ruba1  ( 138 )     gPsvnIsaLWkvLgrpevdGgLVVGtiIkpklglrpkpFAeaChafWl-
                         aaaaaaaa         bbb          aaaaaaaaaaa   
 


    
1geha1  ( 184 )    gADYMKDDenLtspwyNrFeeRAeiMakiIdkVenetgekKTWFANIta-
1gk8a1  ( 196 )    gLDFT-DDenVnsqpfMrwrdRFlfVaeAIykAqaetgevKGHYLNAtAg
5ruba1  ( 186 )    GGDFIKnDepqgnqpfaplrdtIalVAdAMrrAqdetgeaKLFSAnItad
                      bb             aaaaaaaaaaaaaaaaaa     bb       
 


    
1geha1  ( 233 )    dlleMeqrLevLadl-----gLkHAMVDVvitgwgaLryIrdlAadygLA
1gk8a1  ( 246 )    tceeMmkrAv-Akel-----gVpIIMHDYltggftaNtsLAiyCrdngLL
5ruba1  ( 236 )    dpfeIiarGeyVletFgeNashVALLVdGyvagaaAIttArrrfp--dnF
                    aaaaaaaa              bbbbb     aaaaaaaaaa       
 


    
1geha1  ( 278 )    IHGhramhaafTrnp-yhgismfvLAklYRliGIDQLhVgtaeg----gk
1gk8a1  ( 291 )    LHIhramhavidrqr-nhgihFrvLAkaLRmsGGDHLhSgTvvGkleger
5ruba1  ( 284 )    LHYhraghgavTspqskrgytafvHCkmARlqGASGIhTgts--------
                   bbbb                 aaaaaaaaaaa   bbb            
 


    
1geha1  ( 328 )    wdviQnArILreshYkpdenDvfhleqkFysikaAFPTSsggLhPGnIqp
1gk8a1  ( 340 )    eVTlGFVdLMrddyvekdrsrGIyftqdW-smpGVMPVAsggIHVwhMPa
5ruba1  ( 335 )    -sdraiAyMLtqdeaqGp-----fyrqsWggmkaCTPIIsggmnALrMpg
                     aaaaaaaaa  bb           bb       bbbbb       aaa
 


    
1geha1  ( 378 )    VIeaLg-tdIVLqLggGTlgHpdgpaAGArAVrqAIdAimq---------
1gk8a1  ( 390 )    LVeIFg-ddACLQFGgGTlgHpwgnapGAaANrvALeaCtqArnegrdLa
5ruba1  ( 379 )    fFenLgnAnVIlTAgggaFgHidgpvaGArSLrqAWqAwrd---------
                   aaaa      bbb           aaaaaaaaaaaaaaa           
 


    
1geha1  ( 418 )    ---gipLdeyakthkeLarAlekwGhvtp            
1gk8a1  ( 439 )    reggdVIrsaçkwSpeLaaAçevwkeikfe-fdtidkl   
5ruba1  ( 420 )    ---gvpvldyArehkeLarAFeSfpgdAdqiypgWrkalgv
                         aaaaa   aaaaaaaa                   
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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