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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1dqua- | 2 | A | 520 | A | 513 | isocitrate lyase | aspergillus nidulans | 2.80 | 0.2760 |
| 1dxea- | 4 | A | 256 | A | 253 | 2-dehydro-3-deoxy-galactarate aldolase | escherichia coli | 1.8 | 0.171 |
| 1e0ta2 | 1 | A | 344 | A | 231 | pyruvate kinase | escherichia coli | 1.8 | 0.246 |
| 1f8ma- | 1 | A | 427 | A | 427 | isocitrate lyase | mycobacterium tuberculosis | 1.80 | 0.203 |
| 1pyma- | 5 | A | 295 | A | 284 | phosphoenolpyruvate mutase | mytilus edulis | 1.80 | 0.188 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1dqua- ( 2 ) syieeedqryw-deVaaVknwwk-dsRWryTkrpftAeqIVakrgnlkie
1dxea- ( 4 )
1e0ta2 ( 1 )
1f8ma- ( 1 ) asvvgtpksaeqiqqewdtnprwkdVtRtysAedVvalQgsvvee
1pyma- ( 5 )
1dqua- ( 50 ) yp-SnvQAkkLwgiLernfknkeAsfTyGCl----dptmVTqMAk-yldT
1dxea- ( 4 ) dvFpnkFkaaLaa----kqvqiGCWSal--snpisTevlGlagfdW
1e0ta2 ( 1 ) mkkTkIVCtIgpkteseemLakMLdagMnv
1f8ma- ( 46 ) htlArrgAevLweqLhdl----ewVnAlGAL----tGnmAvqqVraglkA
1pyma- ( 5 ) vkkttqlkqlnsk-----dLefiEAh-----nglsarivqeagfkG
aaa bbbb aaaaaaaaa
1dqua- ( 94 ) VYVSGwQSSstaSstdepspdladYpmnTVPnkVnhLwmaQlfhdrkqre
1dxea- ( 44 ) LVLDGehA--pNd-----------------istFipQLmaLk--------
1e0ta2 ( 31 ) MrLnFsh----gd-----------------yaeHgqRIqnLrnVmskt--
1f8ma- ( 88 ) IYLSGwQVAgdaNlsghtypDqSlYpanSVPqvVrrINnALqradqIaki
1pyma- ( 43 ) IWgSglSVsaql-----gvrdsneaswtqvVevLef-SdaSd--------
bbb aaaaaaaaaa
1dqua- ( 144 ) ermttpkdqrhkvanv-dYlrPIIAdAdtGhggltaVmkLTklFVerGAA
1dxea- ( 67 ) -----------------gsaSapVVrVptn------epviIkrLLdiGFy
1e0ta2 ( 58 ) -----------------gktaaILLDTkGpALa-ekDkqDLifGCeqgVd
1f8ma- ( 138 ) egdt----------sVenWlAPIVAdGEAGfggalnVyeLQkaLIaaGVA
1pyma- ( 80 ) --------------------vPILLdAdTGYgnfnnArrLVrkLedrgVA
bbbb aaaaaaaaaaaa
1dqua- ( 193 ) GIHIeDQapgtk-------gkVLVpIseHinRLvaIRaqADi-MgTDLLA
1dxea- ( 94 ) NFLIPfVet--------------------keeAelAvaSTryppeGiRgv
1e0ta2 ( 188 ) fVAASfIrk--------------------rsDVieIrehLka-hgGe---
1f8ma- ( 178 ) GSHWEDQlaseKkcGhl-ggKVLIpTqqHirtLtsARlAAdv-adVpTVV
1pyma- ( 110 ) GACLEDKlfpKtnSlhdgraqpLadieeFalkIkaCkdsQt---dpdFCI
bbbb aaaaaaaaa
1dqua- ( 241 ) IArTDSeaAtlItstidhrDhpfIiGStnpdiqpLndlmvmaeqagknga
1dxea- ( 124 ) svshrANmfg--tva-----------------------------------
1e0ta2 ( 214 ) --------------------------------------------------
1f8ma- ( 226 ) IARTDAeaAtlItsdvderDqpfitgertr--------------------
1pyma- ( 157 ) VArvEAfIAg----------------------------------------
1dqua- ( 291 ) elqaiedeWlakAglklFndaVvdaInnsplpnkkaaiekYltqskgksn
1dxea- ( 137 ) --------------------------------------------------
1e0ta2 ( 214 ) --------------------------------------------------
1f8ma- ( 256 ) --------------------------------------------------
1pyma- ( 167 ) --------------------------------------------------
1dqua- ( 341 ) learaiAkeiagtdiyFdweaPrtregyyrYqggtqCAinRAvaYAp--f
1dxea- ( 137 ) -----------------dYfaqSnknITILVQIEsqqGvdnVdaIAateg
1e0ta2 ( 214 ) -------------------------nihIISkIenqeGlnnFdeIle--a
1f8ma- ( 256 ) -------------------------egfyrTkngiepCiaRAkaYAp--f
1pyma- ( 167 ) --------------------------------wgldeAlkRAeaYrna-g
bbb aaaaa aaaa
1dqua- ( 389 ) AdLIWMeSk-------------lPd-ykqAkeFAdgVhavwpeqKLAynL
1dxea- ( 170 ) VdGIFVgpsdLAaalghlgnashpdVqkaIqhIFnrAsah--gkpSGIlA
1e0ta2 ( 237 ) SdGIMVargdLgveIp------veevifaQkmMIekCira--rkvVITat
1f8ma- ( 279 ) ADLIWMEtg-------------tPd-leaArqFSeaVkaeypdqmLAYNC
1pyma- ( 184 ) AdAILHSkka---------------dpsdieaf-kaWn---nqgpvvIVP
bbb aaaaaaaaaaaa bbbb
1dqua- ( 425 ) SpsfnwkkamprdeqetYikrLGalgYAWQFitlaGlhttalisdtfaka
1dxea- ( 218 ) -pv------------eadArrYlewgAtFVAvgs-dlgvfrsatqkladt
1e0ta2 ( 279 ) mrpt--------daeagdVanAIldgTdaVMlsgepleaVsimatiCert
1f8ma- ( 315 ) SpsFnwkkhlddatiakFqkeLAamgFkFQFitlagfhalnysmfdlayg
1pyma- ( 217 ) TkYy-----------ktptdhFrd-gv-SVIwaNhnlrasvsaiqqttkq
a aaaaaaa bbbb aaaaaaaaaaaaaaa
1dqua- ( 475 ) yakqg-mrAygelvqepeman---gvdvvthqkwsGanyvdnmlkmitgg
1dxea- ( 254 ) fkk
1e0ta2 ( 336 ) drvmn-srle
1f8ma- ( 365 ) yaqnq-msayvel-qerefaaeergytaTkhqrevGagyfdriattvdpn
1pyma- ( 256 ) iyddqslvnVed-----------kivsvkeifrlqrddelvqaedkylpk
a
1dqua- ( )
1dxea- ( )
1e0ta2 ( )
1f8ma- ( 413 ) ssttaltgstEegqf
1pyma- ( 295 ) --------------n
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x