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Protein Alignments organised as Structural Superfamilies


Superfamily :     Serralysin-like metalloprotease, C-terminal domain
Class :    All beta proteins
Fold :    beta-Roll
Number of Members :     1
Average Size :     224


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1kapp1 247 P 470 P 224 tetrapeptide (gly ser asn ser) pseudomonas aeruginosa 1.64 0.186

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1kapp1  ( 247 )    ganlttrtgdTvYGfnSnTerdfYsAtsssskLvFsVwDAggnDtLdFsg
                              bbb       333          bbb       bbb   
 


    
1kapp1  ( 297 )    FsqnQkInLnekalSdVGglkgnVsIaagVtVenAiGGsgsDlLiGndva
                        bbb     bb        bbb       bbb      bbb     
 


    
1kapp1  ( 347 )    NvLkGgagnDiLyGglgaDqLwGgagaDtFvYgdiaeSsaaapDtLrdFv
                    bbb      bbb      bbb      bbb   3333     bbb    
 


    
1kapp1  ( 397 )    sgqDkIdLsgLdaFvngglvlqyvdafagkaGQAilsydaaskaGsLaID
                       bbb    aaaa      bb         bbbbbbb    bbbbbbb
 


    
1kapp1  ( 447 )    fsgdahadFaInLigqAtqaDIvv
                           bbbbbb    333bb 
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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