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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1e0la- | 1 | A | 37 | A | 37 | formin binding protein | mus musculus | --- | --- |
| 1e0na- | 7 | A | 33 | A | 27 | hypothetical protein | saccharomyces cerevisiae | --- | --- |
| 1eg3a3 | 47 | A | 84 | A | 38 | dystrophin | homo sapiens | 2.00 | 0.194 |
| 1i5hw- | 450 | W | 499 | W | 50 | amiloride-sensitive sodium channel beta-subun | rattus norvegicus | --- | --- |
| 1jmqa- | 5 | A | 50 | A | 46 | ww domain binding protein-1 | homo sapiens | --- | --- |
| 1pina1 | 6 | A | 39 | A | 34 | ala-pro dipeptide | homo sapiens | 1.35 | 0.223 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1e0la- ( 1 ) gatavsewteykt-adgktyyynnrtlestwekpqelk
1e0na- ( 7 ) pgweiihen--grplyyNaeqktklhypp
1eg3a3 ( 47 ) pasqhflstsvqgpwerais-pnkvpyyinhetqttcwd
1i5hw- ( 450 ) gspvdsndl---gplppgweerth-tdgrvffinhnikktqwedprm--q
1jmqa- ( 5 ) feIpddvplpagwemakt-ssgqryFkNhidqtttwqDprkaml
1pina1 ( 6 ) klppgwekrmsrssgrvyyfNhitnasqwerPsg
bbbb bbbbb bbb
1e0la- ( )
1e0na- ( )
1eg3a3 ( )
1i5hw- ( 494 ) nvaitg
1jmqa- ( 48 ) sqm
1pina1 ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x