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Protein Alignments organised as Structural Superfamilies


Superfamily :     Prolyl oligopeptidase, N-terminal domain
Class :    All beta proteins
Fold :    7-bladed beta-propeller
Number of Members :     1
Average Size :     426


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1qfma1 1 A 430 A 426 prolyl oligopeptidase porcine 1.40 0.19

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1qfma1  (   1 )    mlsfqypdvyrdetaiqdyhghkv dpyawledpdseqtkafveaqnkit
                                   bbb  bbb    3333    aaaaaaaaaaaaaa
 


    
1qfma1  (  51 )    vpfleq pirglykermtelydypkyschfkkgkryFyFyntGlqnqrVL
                   aaaaa   aaaaaaaaaaaa    bb   bbb  bbbbbbb       bb
 


    
1qfma1  ( 101 )    yVqdslegearvFldPnilsddGtvalrgyaFSedGeyFAYGlSasgsdw
                   bbb       bbbb 3333     bbbbbbbb     bbbbbbbb     
 


    
1qfma1  ( 151 )    vtIkFMkVdgakelpdvLerVkfS MaWThdgkGMFYNAYpqqdgksdgt
                   bbbbbbb    bbbbbbbbbb     bb     bbbbbb           
 


    
1qfma1  ( 201 )    etstnlhQkLyYHvlgtdqseDilCAefpdepkwmGgAeLSddGrYVLLs
                           bbbbbb    333 bbbb        bbbbbb     bbbbb
 


    
1qfma1  ( 251 )    Ireg dpvNrLwyCdlqqesngitgiLkWvkLidnfeGEYdYVTNegtvF
                   bb       bbbbbb333           bbbb      bbbbbbb  bb
 


    
1qfma1  ( 301 )    TFkTnrhSpnyrLInIdFtdpeeskwkvLvpehekdvLewVaCVrsnfLV
                   bbbb       bbbbbb     333 bbbb      bbbbbbbb   bbb
 


    
1qfma1  ( 351 )    LCYlhdvkNtLqLhdlatGallkiFpLevgsVvgysGqkkdteIFYqFts
                   bbbbb  bbbbbbbb     bbbbb     bbbbbb      bbbbbbb 
 


    
1qfma1  ( 401 )    flspGiIyhCdLtkeeleprvfrevtvkgi
                        bbbbbb        bbbbb      
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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