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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1be9a- | 301 | A | 415 | A | 115 | cript | rattus norvegicus | 1.82 | --- |
| 1fc6a3 | 157 | A | 248 | A | 91 | photosystem ii d1 protease | scenedesmus obliquus | 1.80 | 0.168 |
| 1g9oa- | 9 | A | 99 | A | 91 | nhe-rf | homo sapiens | 1.50 | 0.181 |
| 1i16-- | 1 | - | 130 | - | 130 | interleukin 16 | homo sapiens | --- | --- |
| 1ihja- | 12 | A | 105 | A | 94 | phospholipase c | drosophila melanogaster | 1.80 | 0.220 |
| 1kwaa- | 487 | A | 574 | A | 88 | hcask/lin-2 protein | homo sapiens | 1.93 | 0.251 |
| 1qaua- | 14 | A | 125 | A | 112 | neuronal nitric oxide synthase (residues 1-13 | rattus norvegicus | 1.25 | 0.239 |
| 1qava- | 75 | A | 164 | A | 90 | neuronal nitric oxide synthase (residues 1-13 | rattus norvegicus | 1.90 | 0.208 |
| 1qlca- | 155 | A | 249 | A | 95 | postsynaptic density protein 95 | rattus norvegicus | --- | --- |
| 1k32a1 | 763 | A | 853 | A | 91 | tricorn protease | thermoplasma acidophilum | 2.00 | 0.245 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1be9a- ( 301 ) flgeedipreprrIvIhrgs-tgLgFniigG
1fc6a3 ( 157 ) ag----svtgVgLeityd
1g9oa- ( 9 ) rmlprlCcLekg-pngYgFhLhge
1i16-- ( 1 ) mpdlnsstdsaasasaasdvsvestaeatvctvtLekms-agLgFsLegg
1ihja- ( 12 ) ge-lihmVtLdktgkksFGIcIvrg
1k32a1 ( 763 ) GrIaCdFkld
1kwaa- ( 487 ) rsrlvqFqKntdepmgItLkmn
1qaua- ( 14 ) nvIsVrLfkrkvgglGFlvker
1qava- ( 75 ) gslqrrrvtVrkadagglgIsikGG
1qlca- ( 155 ) ae-kvmeIkLikg-pkglGFsIAGG
bbbbbb bbbbb
1be9a- ( 331 ) e----------dgeGIFIsfila--------ggpAdlsg-eLrkGDqIls
1fc6a3 ( 171 ) g---------gsgkdVvVltpap--------ggpAekag--AragdvIvt
1g9oa- ( 32 ) k----------gklgqyIrlvep--------gspAekag--LlagDrLve
1i16-- ( 50 ) kgslhg------dkpLtInrifk---------gaaseqseTvqpgDeIlq
1ihja- ( 36 ) ---evkdspntkttgIfIkgivp--------dspAhlcg-rLkvgDrIls
1k32a1 ( 773 ) ------------gdhyvVakAyagdysnegekSpIfeyg-idPtgylIed
1kwaa- ( 509 ) -------elnh----CiVarimh--------ggMIhrqg-tLhvgDeIre
1qaua- ( 36 ) v----------skppViIsdlir--------ggaAeqsg-lIqagDiIla
1qava- ( 100 ) renk---------mpIlIskifk--------glAAdqte-aLfvgDAIls
1qlca- ( 178 ) vgnqhip----gdnsIyVtkIie--------ggAAhkdG-rLqigdkIla
bbbbbb aaaa bbbb
1be9a- ( 362 ) VngvdLrnasheqAaiaLknag--qtVtIiAqYkPeeYsrfeanSrvnss
1fc6a3 ( 202 ) VdgtaVk-gslydVsdlLq-geadsqVeVvLhap-------------gap
1g9oa- ( 62 ) VngenVekethqqVvsriraal--naVrLlVvdpetd-------------
1i16-- ( 85 ) LggTaMqgltrfeAwniIkalp-dgpVtIvIrrkslqskettaagd----
1ihja- ( 74 ) LngkdVrnsteqaVidlikead--fkIeLeIqtf
1k32a1 ( 810 ) IdgetVgags--nIyrVLseka-gtsarIrLsgk---------------g
1kwaa- ( 539 ) IngisVanqtveqLqkmlremr--gsItFkIvpsyre-------------
1qaua- ( 67 ) VndrpLvdlsydsAlevlrgiasethVvLiLrGpe--gftThlettftgd
1qava- ( 132 ) VngedLssathdeAvqalkkTg--keVvLeVkymk
1qlca- ( 215 ) VnsvgLedvmhedAvaaLknTy--dvVyLkVakps-n-------------
b bb aaaaaaaaa bbbbbbb
1be9a- ( 410 ) grIvtn
1fc6a3 ( 238 ) sntrtlqLtrq
1g9oa- ( 97 ) ---eql
1i16-- ( 130 ) -----------s
1ihja- ( )
1k32a1 ( 842 ) gdkrdlmIdIld
1kwaa- ( 574 ) -----f
1qaua- ( 115 ) gtpktirvtqp
1qava- ( )
1qlca- ( 249 ) -----a
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x