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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs | Structural Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1eg9a1 | 1 | A | 154 | A | 154 | naphthalene 1,2-dioxygenase beta subunit | pseudomonas putida | 1.6 | 0.190 |
| 1fqta- | 1 | A | 109 | A | 109 | rieske-type ferredoxin of biphenyl dioxygenas | burkholderia cepacia | 1.6 | 0.180 |
| 1g8kb- | 1 | B | 133 | B | 133 | arsenite oxidase | alcaligenes faecalis | 1.64 | 0.154 |
| 1rfs-- | 53 | - | 179 | - | 127 | rieske protein | spinacia oleracea | 1.83 | 0.170 |
| 1rie-- | 70 | - | 196 | - | 127 | rieske iron-sulfur protein | bos taurus | 1.5 | 0.187 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1eg9a1 ( 1 ) mnynnkilvsesglsqkhlihgdeelfqhelktifarnwlfLTh---dsl
1fqta- ( 1 ) mkftrvcd---rrd
1g8kb- ( 1 ) rttlaypa----taVsv---Akn
1rfs-- ( 53 ) tiAkdalgndViaaewlkt
1rie-- ( 70 ) amskieIk---Lsd
bbbb 333
1eg9a1 ( 48 ) IpapgdyvTakMg--ideVIVSrqn-------------------------
1fqta- ( 12 ) Vp-egealkvesg--gtSVAIFnVd-------------------------
1g8kb- ( 17 ) La-anepvsftYPdtsSpCvAVkLgapvp-----------------gGvG
1rfs-- ( 72 ) ha-pgdrtlTqGlk-gdpTYLVVes-------------------------
1rie-- ( 81 ) Ip-egknmafkwr--gkpLFVRhRtkkeidqEaavevsqLrdpqhDleRV
bbbbb bbbbbb
1eg9a1 ( 71 ) --dgsIrAFlNvCrhrgktLvsveagnakgFvCsyhgWgFGs--nGeLqs
1fqta- ( 34 ) ---geLfATqDrCthgdwsLSdggyLegdvVeCslhmGkFcVr-tGkvks
1g8kb- ( 49 ) pddDI-vAYSvlCThmGçpTsYd-s-sskTFsCpçhfTeFdAekaGqmic
1rfs-- ( 95 ) dktLAtfGInAvCthlgçvVpfn-a-aenkFiCpçhgSqYnn--qGrvvr
1rie-- ( 128 ) kkpeW-VILiGvCthlgçvPian-agdfgGYyCpçhgShYDA--SGRIrk
bbbb bbb bbb bbb
1eg9a1 ( 117 ) VpfekdlygeslnkkclgLkeVarvesf--hgfIyGCfdq
1fqta- ( 80 ) ppPc------------eaLkiF-pirie--dndVlVDFeaGylap
1g8kb- ( 96 ) GeAt------------adLPrV-lLrydaasdaLtAvgVdglIygrqanv
1rfs-- ( 141 ) gpAp------------lsLaLA-hCdvd--dgkVvFvpwtetDfRtgeaP
1rie-- ( 174 ) gpAp------------lNLevP-sYeftsd-dmViVg
bbb bbbb
1eg9a1 ( )
1fqta- ( )
1g8kb- ( 133 ) i
1rfs-- ( 176 ) wwsa
1rie-- ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x