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Protein Alignments organised as Structural Superfamilies


Superfamily :     Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
Class :    All alpha proteins
Fold :    Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
Number of Members :     1
Average Size :     300


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1f5na1 284 A 583 A 300 interferon-induced guanylate-binding protein homo sapiens 1.70 0.226

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1f5na1  ( 284 )    ggiqvngprleslvltyvnaissgdlpcmenAvlalAqieNsaAVqkAia
                         aaaaaaaaaaaaaaaaa     aaaaaaaaaaaaaaaaaaaaaa
 


    
1f5na1  ( 334 )    hYeqqMgqkVqlpTesLqeLLdlHrdSEreAIevFirsSfkdvdhlfQke
                   aaaaaaaaa       aaaaaaaaaaaaaaaaaaaaaa    333aaaaa
 


    
1f5na1  ( 384 )    LaaqLekkrddfckqNqeaSsdrCsgllqvIFspLeeevkagiyskpggY
                   aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa        aa
 


    
1f5na1  ( 434 )    rlFvqklqdlkkkYyeeprkGiqaeeiLqtylkskesmtdaILqtDqtlt
                   aaaaaaaaaaaaaaaa       aaaaaaaaaaa aaaaaaaaaa     
 


    
1f5na1  ( 484 )    ekekeievervkaesaqasakmlhemqrkneqmmeqkersyqehlkqlte
                   aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
 


    
1f5na1  ( 534 )    kmendrvqllkeqertlalklqeqeqllkegfqkeSrimkneiqdlqtkm
                   aaaaaaaaaaaaaaaaaaaaaaaaaaaaaa  aaaaaaaaaaaaaaaaa 
 


    
                   
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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