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Protein Alignments organised as Structural Superfamilies


Superfamily :     C-terminal domain of alpha and beta subunits of F1 ATP synthase
Class :    All alpha proteins
Fold :    Left-handed superhelix
Number of Members :     2
Average Size :     124


Alignment Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1e79a1 380 A 510 A 131 atp synthase epsilon chain bos taurus 2.4 0.225
1e79d1 358 D 475 D 118 atp synthase epsilon chain bos taurus 2.4 0.225

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1e79a1  ( 380 )          trAmkqVagtmklelaqyrevaafaqf--gsdldaatqqllsrG
1e79d1  ( 358 )    mdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltVsrA
                          aaaaaaaaaaaaaaaaaaaa               aaaaaaaa
 


    
1e79a1  ( 422 )    vrLteLlkqgqy----------spmaieeqVAViyAGVrgyLdkLepskI
1e79d1  ( 408 )    rkIqrFlsqPfqvaevftghlGklvplketikGfqqIlageydhlpeqAF
                   aaaaa                     aaaaaaaaaaaa        333 
 


    
1e79a1  ( 462 )    t--kFenaFlshVisqhqaLLgkIrtdgkIseeSdakLkeiVtnflagfe
1e79d1  ( 458 )    ymvGpIeeAvakAdklae                                
                        aaaaaaaaaaa                                  
 


    
1e79a1  ( 510 )    a
1e79d1  (     )     
                    
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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