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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs | Structural Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1adr-- | 1 | - | 76 | - | 76 | p22 c2 repressor (amino-terminal dna-binding domain, | salmonella bacteriophage p22 expressed in (escherichia c | --- | --- |
| 1b0na2 | 1 | A | 68 | A | 68 | sini protein | bacillus subtilis | 1.90 | 0.199 |
| 1d1la- | 1 | A | 61 | A | 61 | lambda cro repressor | lambda bacteriophage | 2.10 | 0.181 |
| 1dw9a1 | 2 | A | 86 | A | 84 | cyanate lyase | escherichia coli | 1.65 | 0.15 |
| 1e3oc2 | 1 | C | 75 | C | 75 | 5'-d(*tp*cp*cp*tp*cp*ap*tp*gp*cp*ap*t)-3' | homo sapiens | 1.9 | 0.220 |
| 1lmb3- | 6 | 3 | 92 | 3 | 87 | lambda repressor/operator complex | bacteriophage (lambda) | 1.8 | 0.220 |
| 1ner-- | 1 | - | 74 | - | 74 | dna-binding protein ner | bacteriophage mu | --- | --- |
| 1r69-- | 1 | - | 63 | - | 63 | 434 repressor (amino-terminal domain) (r1-69) | phage 434 | 2.0 | --- |
| 1uxd-- | 1 | - | 59 | - | 59 | fructose repressor | escherichia coli | --- | --- |
| 1vpwa1 | 3 | A | 58 | A | 56 | dna | escherichia coli | 2.7 | 0.174 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1adr-- ( 1 ) mntqlmGerIrarRkklkirqaaLGkmVgvsnvaIsqWErsetePngenl
1b0na2 ( 1 ) miGqrIkqyrkekgyslseLAekAgvaksyLssIErnlqtnpsiqFLekV
1d1la- ( 1 ) meqritLkdYAmrfgqtkTakdlgvyqsaInkaihagrkifLTinadgsV
1dw9a1 ( 2 ) iqsqinrniRldladaIllskakkdlsfaeIAdgTglaeafVtaALlGqq
1e3oc2 ( 1 ) eepsdleeLeqfAktFkqrriklgftqgdVGlaMgklygndfsqttIsrF
1lmb3- ( 6 ) pltqeqleDArrLkaiYekkknelgLsqesVAdkMgmgqsgVgaLFnGin
1ner-- ( 1 ) csnekardwhradViagLkkrklslsaLSrqfgyapttLanAlerhwpkG
1r69-- ( 1 ) sIssrVkskriqlglnqaeLAqkVgttqqsIeqLEngktkrprFlpeLAs
1uxd-- ( 1 ) mkldeIArlAgvsrttAsyVIngkAkqyrVsdkTvekVmavVrehnyhpn
1vpwa1 ( 3 ) tikdVakrAnvstttVshVinktrfvaeetrnaVwaAIkelhyspsavar
aaaaaaaaa aaaaaaa aaaaaaaa
1adr-- ( 51 ) laLSkaLqcspdyLlkGdlsqtn
1b0na2 ( 51 ) savLdvsvhtLlde
1d1la- ( 51 ) yaeevkpwps
1dw9a1 ( 52 ) aLpadAArlVGakLdldedsillLqiPlr
1e3oc2 ( 51 ) EalnlsfknMskLkplLekWlnda
1lmb3- ( 56 ) aLnaynAalLakiLkvsveeFSpsiareiy
1ner-- ( 51 ) eqIIAnaletkPevIWpsryqag
1r69-- ( 51 ) aLgvsvdwLlng
1uxd-- ( 51 ) avaaglrl
1vpwa1 ( 53 ) smkvn
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x