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Protein Alignments organised as Structural Superfamilies


Superfamily :     Bacterial GAP domain
Class :    All alpha proteins
Fold :    Four-helical up-and-down bundle
Number of Members :     3
Average Size :     126


Alignment Matrices Tree Genome Distribution HMM Interacting Motifs

Protein
Code		 Start
Residue		 Start
Chain		 End
Residue		 End
Chain		 Domain
Size		 Name Source Resolution R-factor
1g4us1 167 S 296 S 130 ras-related c3 botulinum toxin substrate 1 homo sapiens 2.30 0.204
1he1a- 95 A 229 A 135 ras-related c3 botulinum toxin substrate 1 homo sapiens 2.0 0.175
1hy5a- 1100 A 1218 A 115 yersinia pestis virulence protein yope yersinia pestis 2.25 0.174

| pir | postscript | superposed-coordinates |

Alignment Based On Similarities In Structural Features (COMPARER Alignment) 



 
1g4us1  ( 167 )              skqplldiALkgLkrTLpqLeqMdgnsLrenFqemAsgng
1he1a-  (  95 )    assavvfkqmvlqqaLpmtlkgL-dkAseLatltpegLareHsrLAsgdg
1hy5a-  (1100 )            tsfsdsikqlAaetl-pkyqqLnsLda-eLqknHdqfAtgsg
                              aaa aaaaaaa                   aaaa     
 


    
1g4us1  ( 207 )    pLrsLmtnLqnLnkipeakqlndyVttltniqVGvarFsqWGtcggeVer
1he1a-  ( 144 )    ALrsLstALagIraGSqveeSriqAgrLLersIGgiaLqqWGttggaAsq
1hy5a-  (1142 )    PLrgsItqCqgLqf--CggelqaeAsaIlntpVcgipFsqWGtiggaAsa
                   aaaaaaaaaa        aaaaaaaaaaa                 aaaa
 


    
1g4us1  ( 257 )    wVdkAstheLtqAvkkIhvIAkeLknVtaeLekieaga            
1he1a-  ( 194 )    lVldAspelrreITdqLhqVmseValLrqaVesev               
1hy5a-  (1191 )    yvasgv--dLtqAAneIkgLaq-qqkLls                     
                   aa        aaaaaaaaaaaa                            
 

 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x


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