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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1dova- | 82 | A | 262 | A | 181 | alpha-catenin | mus musculus | 3.00 | 0.218 |
| 1h6ga1 | 377 | A | 507 | A | 129 | alpha-1 catenin | homo sapiens | 2.2 | 0.193 |
| 1h6ga2 | 508 | A | 630 | A | 120 | alpha-1 catenin | homo sapiens | 2.2 | 0.193 |
| 1qkra- | 881 | A | 1061 | A | 172 | vinculin | gallus gallus | 1.8 | 0.200 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1dova- ( 82 ) esqfLkeelvvAvedvrkqgdlmksaagefaddpcssvkrgnmvra
1h6ga1 ( 377 )
1h6ga2 ( 508 )
1qkra- ( 881 ) kdeeFpeqkageainqp
1dova- ( 128 ) arallsavtrlliLadmadvykLlvqLkvVedgIlkLrnag---neqdLg
1h6ga1 ( 377 ) dlrrqlrkavmdhvsdsfleTnvpLlvLieAAkngnekeVk
1h6ga2 ( 508 ) iddfLavSenhIledvnkCviaLqekdvdGLd
1qkra- ( 901 ) aarqlhdEArkwsskgNdIIaAAkrallaesrLvrg------------gs
aaaaaaa aaaaaaaa aaaaa
1dova- ( 175 ) iqykaLkpeVdkLnimAakrqqeLkdvgnrdqMaaargiLqknVpiLyta
1h6ga1 ( 418 ) eyaqvFrehAnkLievAnlaCsisnneegvklVrSAsqLealCpqVInaA
1h6ga2 ( 540 ) rtAgaIrgraarVihvVts-ednyepgvytekvleatklLsntVprFteq
1qkra- ( 942 ) gnkraliqcAkdiakaSdeVtrlAkeVAkqCtdkrirtnLlqvCerIpti
aaaaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaa aaaaa
1dova- ( 225 ) SqaClqhpdvaaykanrdliykqLqqaVtgIsnAAqa
1h6ga1 ( 469 ) lalAakpqsklaqendlfkeqWekqvrvLtdAvdd
1h6ga2 ( 591 ) veaavealssdpaqpdeneFidASrlVydgIrdIrkav
1qkra- ( 992 ) StqlkilStvkAtlgrtnisdeeseqatelvhnaqnlqsvkeTVreAeaA
aaaaaa aa aaaaaaaaaaaaaaaaaaa
1dova- ( )
1h6ga1 ( )
1h6ga2 ( )
1qkra- (1045 ) Sikirtdagftlrwv
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x