 Home
About pass2
Superfamily list
Align query
Useful tools
Search
Help
Lab page
|
Protein Alignments organised as Structural Superfamilies |
|
|
| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs | Structural Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1b67a- | 2 | A | 69 | A | 68 | histone hmfa | methanothermus fervidus | 1.48 | 0.188 |
| 1bh9a- | 31 | A | 75 | A | 45 | tafii28 | homo sapiens | 2.6 | 0.205 |
| 1bh9b- | 113 | B | 201 | B | 89 | tafii28 | homo sapiens | 2.6 | 0.205 |
| 1f1ea- | 4 | A | 154 | A | 147 | histone fold protein | methanopyrus kandleri | 1.37 | 0.143 |
| 1hq3a- | 13 | A | 118 | A | 106 | histone h4-vi | gallus gallus | 2.15 | 0.214 |
| 1hq3b- | 33 | B | 124 | B | 92 | histone h4-vi | gallus gallus | 2.15 | 0.214 |
| 1hq3c- | 41 | C | 135 | C | 95 | histone h4-vi | gallus gallus | 2.15 | 0.214 |
| 1hq3d- | 20 | D | 102 | D | 83 | histone h4-vi | gallus gallus | 2.15 | 0.214 |
| 1jfia- | 10 | A | 75 | A | 63 | 5'- | homo sapiens | 2.62 | 0.233 |
| 1jfib- | 109 | B | 243 | B | 135 | 5'- | homo sapiens | 2.62 | 0.233 |
| 1tafa- | 19 | A | 86 | A | 68 | tfiid tbp associated factor 62 | drosophila melanogaster | 2.0 | 0.198 |
| 1tafb- | 1 | B | 70 | B | 70 | tfiid tbp associated factor 62 | drosophila melanogaster | 2.0 | 0.198 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1b67a- ( 2 )
1bh9a- ( 31 )
1bh9b- ( 113 )
1f1ea- ( 4 ) eLpkaAIerIFrqGIgerrLsqdAkdtIydfVptAeyvAnaAksvLdasg
1hq3a- ( 13 )
1hq3b- ( 33 )
1hq3c- ( 41 )
1hq3d- ( 20 )
1jfia- ( 10 )
1jfib- ( 109 )
1tafa- ( 19 )
1tafb- ( 1 )
1b67a- ( 2 ) gelpiapigriikna----g-aervs
1bh9a- ( 31 ) lfskeLrcmmygf----gddqnPy
1bh9b- ( 113 ) fseeqlnryemyr-----rsafpkaaikrliqsi----tg-tsvs
1f1ea- ( 55 ) kktLeehLkaLadvlvegVedYdgelFgratVrrILkra-----gIerAs
1hq3a- ( 13 ) kaksrssraglqfpVgrvhrllrkgnyae----rvg
1hq3b- ( 33 ) rkesysiyvykvlkqvhpd----tgis
1hq3c- ( 41 ) yrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfq
1hq3d- ( 20 ) kvlrdn-----iqgitkpaIrrlarrg----g-vkrIs
1jfia- ( 10 ) arfpparikkimqtd----eeigkva
1jfib- ( 109 ) ddltipraaInkmiketlpn----vrva
1tafa- ( 19 ) pkdaqvimsilkel----n-vqeye
1tafb- ( 1 ) mlyg--------ssisaesmkviaesi----g-vgsls
aaaaaaaaaa
1b67a- ( 23 ) ddarialAkvleemgeeiaseAvklAkhagrk-tikaeDielarkmfk
1bh9a- ( 51 ) tesVdiledlviefitemthkamsi
1bh9b- ( 148 ) qnvViamsgiskvfvgevveeAldVCekwgempplqpkHmreAvrrLksk
1f1ea- ( 102 ) sdAVdlYNkLICraTeeLGekAAeyAdedgrk-tVqgeDVekAityspkg
1hq3a- ( 45 ) agaPvylAavleyltaeilelAgnaArdnkkt-riiprHlqlaIrndeel
1hq3b- ( 56 ) skamgimnsfvndiferiageAsrlahynkrs-titsreiqtAvrlllp-
1hq3c- ( 86 ) ssaVmalQeaseaylvglfedTnlcAihakrv-timpkDiqlArrirger
1hq3d- ( 48 ) gliyeetrgvlkvflenVirdAvtyTehakrk-tvtamDvvyAlkrqgrt
1jfia- ( 32 ) aavPviiSralelflesllkkAcqvtqsr----tmttshlkqcie
1jfib- ( 133 ) ndarelvVncctefihlisseAneiCnksekk-tispeHviqALeslgfg
1tafa- ( 39 ) prvvnqlleftfryvtsilddAkvyAnharkk-tidlddvrlAtevtld
1tafb- ( 26 ) ddaAkelaedvSiklkrivqdAakfmnhakrq-klsvrDidmSlkv
aaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaa
1b67a- ( )
1bh9a- ( )
1bh9b- ( 198 ) g--qIp
1f1ea- ( 152 ) G--el
1hq3a- ( 94 ) n--kllgkvtiaqGgvlpniqavllpk
1hq3b- ( 104 ) ------gelakhavsegtkavtkytss
1hq3c- ( 135 ) a
1hq3d- ( 97 ) l--ygfgg
1jfia- ( )
1jfib- ( 182 ) syisevkevlqecktvalkrrkassrlenlgipeeellrqqqelfakarq
1tafa- ( )
1tafb- ( )
1b67a- ( )
1bh9a- ( )
1bh9b- ( )
1f1ea- ( )
1hq3a- ( )
1hq3b- ( )
1hq3c- ( )
1hq3d- ( )
1jfia- ( )
1jfib- ( 232 ) qqaelaqqewlq
1tafa- ( )
1tafb- ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x