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Protein Alignments organised as Structural Superfamilies |
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| Alignment | Matrices | Tree | Genome Distribution | HMM | Interacting Motifs |
| Protein Code |
Start Residue |
Start Chain |
End Residue |
End Chain |
Domain Size |
Name | Source | Resolution | R-factor |
|---|---|---|---|---|---|---|---|---|---|
| 1h7wa1 | 2 | A | 183 | A | 182 | dihydropyrimidine dehydrogenase | sus scrofa | 1.9 | 0.174 |
| 1l0vb1 | 106 | B | 243 | B | 138 | fumarate reductase 13 kda hydrophobic protein | escherichia coli | 3.30 | 0.245 |
| 1qlab1 | 107 | B | 239 | B | 133 | fumarate reductase cytochrome b subunit | wolinella succinogenes | 2.2 | 0.212 |
| pir | postscript | superposed-coordinates |
Alignment Based On Similarities In Structural Features (COMPARER Alignment)
1h7wa1 ( 2 ) apvlskdvadiesilalnprtqshaalhstlakkldkkhwkr--------
1l0vb1 ( 106 ) m-thFieSleaIkpyii-gnsrt
1qlab1 ( 107 ) tgnwFngMsqrVeswihaqkehd
aaaaaaaaa
1h7wa1 ( 44 ) ----npdkncfhceklennfddikhttlg-------ergAlreAmrclkc
1l0vb1 ( 127 ) adqg-------------------------tniQtpaqmakYhqfsgcinc
1qlab1 ( 130 ) iskl-------------------------eeriepevaqevfeLdrciec
aa
1h7wa1 ( 83 ) adApcqkscpt------hLdIksFItsIsnk-------nyygAAkmIfsd
1l0vb1 ( 152 ) --glcYaacpqfglnpeFiGPAAITlAHryneDsrDhG-kkeRMaqLnsq
1qlab1 ( 155 ) --gcciaacgTkimredFVGAAGLNrVVrfMiDphDeRtdedYyelIGdd
aaaa aaaaaaaaa aaaaaaaa
1h7wa1 ( 120 ) nplGltcGmvcptsdlcvggcnlyateegsInIgGLqQfASevfkamnip
1l0vb1 ( 199 ) ---nGVwsctfvg--ycsevcpk------hVdPaaAIqqgkveSskdfli
1qlab1 ( 203 ) ---dGVfgcmtll--achdvcpk------nLpLqskiayLrrkMvsvn
aaaaaaaaaaaaa
1h7wa1 ( 170 ) qirnpclpsqekmp
1l0vb1 ( 238 ) atlkpr
1qlab1 ( )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x