PASS2-imot

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Protein Alignments organised as Structural Superfamilies

Interacting Motifs:

Interacting motif for 1cdza-
Motif
Rank Interacting
Motif Residue No in PDB Position No in alignment No of Motifs
interact Prosite Motifs
Start END Start END
1
DYMSD
38
42
49
56
8
-----
2
KLIRY
24
28
35
39
8
-----
3
WIYSC
74
78
108
112
8
-----
4
HFFLY
10
14
21
25
8
-----
5
WDPSF
53
57
87
91
8
-----
6
EFPGD
16
20
27
31
8
-----
7
PHQLY
86
90
120
124
8
-----
8
PDFFQ
3
7
13
18
8
-----
9
LMDNP
61
65
95
99
8
-----

Motif Rank	Interacting Motif	Residue No in PDB	Position No in alignment	No of Motifs interact	Prosite Motifs
Start	END	Start	END
1	DYMSD	38	42	49	56	8	-----
2	KLIRY	24	28	35	39	8	-----
3	WIYSC	74	78	108	112	8	-----
4	HFFLY	10	14	21	25	8	-----
5	WDPSF	53	57	87	91	8	-----
6	EFPGD	16	20	27	31	8	-----
7	PHQLY	86	90	120	124	8	-----
8	PDFFQ	3	7	13	18	8	-----
9	LMDNP	61	65	95	99	8	-----

Interacting motif for 1dgtb3
Motif
Rank Interacting
Motif Residue No in PDB Position No in alignment No of Motifs
interact Prosite Motifs
Start END Start END
1
RKTSY
2623
2627
60
64
6
-----
2
RPREE
2601
2605
35
39
6
-----
3
LEKAR
2638
2642
75
79
6
-----
4
EFWRF
2653
2657
90
94
6
-----
5
LLGRL
2609
2613
43
47
6
-----
6
GENPG
2631
2635
68
72
6
-----
7
GLTFV
2590
2594
19
23
6
-----

Motif Rank	Interacting Motif	Residue No in PDB	Position No in alignment	No of Motifs interact	Prosite Motifs
Start	END	Start	END
1	RKTSY	2623	2627	60	64	6	-----
2	RPREE	2601	2605	35	39	6	-----
3	LEKAR	2638	2642	75	79	6	-----
4	EFWRF	2653	2657	90	94	6	-----
5	LLGRL	2609	2613	43	47	6	-----
6	GENPG	2631	2635	68	72	6	-----
7	GLTFV	2590	2594	19	23	6	-----

Interacting motif for 1in1a-
Motif
Rank Interacting
Motif Residue No in PDB Position No in alignment No of Motifs
interact Prosite Motifs
Start END Start END
1
RKRRL
914
918
114
118
9
-----
2
LRRYF
868
872
36
40
9
-----
3
FDGDL
875
879
43
47
9
-----
4
RDKNP
895
899
95
99
9
-----
5
LLDIF
847
851
13
17
9
-----
6
QEFDM
881
885
49
56
9
-----
7
WIWAC
908
912
108
112
9
-----
8
DETLC
838
842
4
8
9
-----
9
THVLG
889
893
61
65
9
-----
10
LYLPP
856
860
22
26
9
-----

Motif Rank	Interacting Motif	Residue No in PDB	Position No in alignment	No of Motifs interact	Prosite Motifs
Start	END	Start	END
1	RKRRL	914	918	114	118	9	-----
2	LRRYF	868	872	36	40	9	-----
3	FDGDL	875	879	43	47	9	-----
4	RDKNP	895	899	95	99	9	-----
5	LLDIF	847	851	13	17	9	-----
6	QEFDM	881	885	49	56	9	-----
7	WIWAC	908	912	108	112	9	-----
8	DETLC	838	842	4	8	9	-----
9	THVLG	889	893	61	65	9	-----
10	LYLPP	856	860	22	26	9	-----

Interacting motif for 1jnxx1
Motif
Rank Interacting
Motif Residue No in PDB Position No in alignment No of Motifs
interact Prosite Motifs
Start END Start END
1
NEHDF
1730
1734
120
124
10
-----
2
VRGDV
1736
1740
126
130
10
-----
3
RARES
1751
1755
141
145
10
-----
4
FVCER
1695
1699
83
87
10
-----
5
HVVMK
1686
1690
62
66
10
-----
6
RKHHI
1670
1674
41
45
10
-----
7
NHQGP
1745
1749
135
139
10
-----
8
YFWVT
1716
1720
106
110
10
-----
9
PEEFM
1659
1663
30
34
10
-----
10
YFLGI
1703
1707
91
95
10
-----
11
LTNLI
1676
1680
47
54
10
-----

Motif Rank	Interacting Motif	Residue No in PDB	Position No in alignment	No of Motifs interact	Prosite Motifs
Start	END	Start	END
1	NEHDF	1730	1734	120	124	10	-----
2	VRGDV	1736	1740	126	130	10	-----
3	RARES	1751	1755	141	145	10	-----
4	FVCER	1695	1699	83	87	10	-----
5	HVVMK	1686	1690	62	66	10	-----
6	RKHHI	1670	1674	41	45	10	-----
7	NHQGP	1745	1749	135	139	10	-----
8	YFWVT	1716	1720	106	110	10	-----
9	PEEFM	1659	1663	30	34	10	-----
10	YFLGI	1703	1707	91	95	10	-----
11	LTNLI	1676	1680	47	54	10	-----

Interacting motif for 1jnxx2
Motif
Rank Interacting
Motif Residue No in PDB Position No in alignment No of Motifs
interact Prosite Motifs
Start END Start END
1
EWVLD
1836
1840
107
111
8
-----
2
CCYGP
1767
1771
23
27
8
-----
3
QLEWM
1779
1783
35
39
8
-----
4
YLIPQ
1853
1857
124
128
8
-----
5
LYQCQ
1844
1848
115
119
8
-----
6
WTGFH
1815
1822
88
92
8
-----
7
QLCGA
1785
1789
41
45
8
-----
8
IGQMC
1824
1828
94
98
8
-----
9
GVHPI
1803
1807
59
63
8
-----

Motif Rank	Interacting Motif	Residue No in PDB	Position No in alignment	No of Motifs interact	Prosite Motifs
Start	END	Start	END
1	EWVLD	1836	1840	107	111	8	-----
2	CCYGP	1767	1771	23	27	8	-----
3	QLEWM	1779	1783	35	39	8	-----
4	YLIPQ	1853	1857	124	128	8	-----
5	LYQCQ	1844	1848	115	119	8	-----
6	WTGFH	1815	1822	88	92	8	-----
7	QLCGA	1785	1789	41	45	8	-----
8	IGQMC	1824	1828	94	98	8	-----
9	GVHPI	1803	1807	59	63	8	-----

Common Interacting Motifs:

Protein Code	Motif1	Motif2	Motif3	Motif4	Motif5	Motif6	Motif7	Motif8	Motif9	Motif10	Motif11	Motif12
1cdza-	HFFLY	KLIRY	-----	-----	WDPSF	WIYSC	DYMSD	LMDNP	PHQLY	PDFFQ	EFPGD	-----
1dgtb3	GLTFV	RPREE	LLGRL	RKTSY	EFWRF	-----	-----	-----	-----	-----	-----	-----
1in1a-	LYLPP	LRRYF	FDGDL	THVLG	-----	WIWAC	QEFDM	RDKNP	-----	LLDIF	-----	RKRRL
1jnxx1	-----	-----	RKHHI	HVVMK	YFLGI	YFWVT	LTNLI	-----	NEHDF	-----	PEEFM	-----
1jnxx2	CCYGP	QLEWM	QLCGA	GVHPI	WTGFH	EWVLD	-----	IGQMC	YLIPQ	-----	-----	LYQCQ