Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1mk0a-  (   1 )    mksGIYqIkNtlnnk-vyVgsAkdFekrwkrHfkdLe-kgcHsSikLqrs
NP-603  (   1 )        VYLMKKN-N-KVIYVGKAKNLKNRVSSYFNR-VHESE-KTNELVKN
NP-078  (   1 )       GCYLWKDQFN-QIIYIGKAKDLYNRTHSYFNG-CKDN--KTSKLVNN
BAA857  (   1 )        VYIFRKG-G-VPIYIGKANNLRSRVSQHFKA-GGKSG-K---FTKL
NP-214  (   1 )       GVYLFKKG-N-RPIYIGKAKNLKKRLLQHLKA-SEYDS-KERAIISN
NP-618  (   1 )        CYLFKDEEG-VVLYVGKAKDLKKRVSSYFQK-RDHDP-KTTSLVQA
NP-635  (   1 )        CYLFKDEEG-IVLYVGKAKDLKKRVSSYFQK-RDHDP-KTASLMQF
ZP-000  (   1 )        CYLFKNEEG-TVIYVGKAKDLKKRVSSYFQK-REHDP-KTASLIEA
NP-218  (   1 )       GVYLWKDVHG-VVIYVGKAKSLRTRLTSYFRC-R-HDP-KTRVLMSR
AAB019  (   1 )         YRFYHEKN-TLLYVGKAKNLKSRMNQYAKG-ATNSY-KTEVLIRK
NP-325  (   1 )       GVYFWKDQFN-SILYIGKANNLNDRMKQYFKG-SLNSY-KTHALVEK
                      bbbbbbb      bbbbbb  aaaaaaaaaaaaa a     aaaaaa
 


    
1mk0a-  (  49 )    fnkhg-nvFecsileeipyekdlIierAnfwIkelnSkinGYniadatfg
NP-603  (  49 )    IEDIE---T-NT---EI----DAL-LLENNLIKKYS---PKYNILLKDEK
NP-078  (  49 )    INDLV---V-NN---VN----EAL-ILENNLIKTHL---PKYNILLKDG 
BAA857  (  49 )    AESLE---A-AN---EV----EAL-VLEANLIKQHR---PHYNVLLKDD 
NP-214  (  49 )    SDNLV---T-RN---EY----EAL-VLEIDLIQQYK---PRYNVLHKF  
NP-618  (  49 )    ARGLD---T-NT---EV----EAL-LLENTLIKKHW---PRYNILLKDS 
NP-635  (  49 )    ARGLD---T-NT---EV----EAF-LLENTLIKKHW---PRYNIMLKDS 
ZP-000  (  49 )    VRGFD---T-NT---EV----EAF-LLENTLIKKHW---PRYNILLKDS 
NP-218  (  49 )    AAALEYLQT-QH---EY----EAL-LLENTLIKKHT---PRYNICLKDGK
AAB019  (  49 )    TKEI----KYQN---ET----EAL-ILEKKIISKFQ---PIYNIKLKD  
NP-325  (  49 )    IANF----IVQN---PK----EAL-ILERNLIRKHK---PYYNILLSDDK
                   aaaa    bbbbbbbb    aaaaaaaaaaaaaa                
 


    
1mk0a-  (     )     
NP-603  (     )     
NP-078  (     )     
BAA857  (     )     
NP-214  (     )     
NP-618  (     )     
NP-635  (     )     
ZP-000  (     )     
NP-218  (     )    T
AAB019  (     )     
NP-325  (     )    R
                    
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x