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Protein Alignments organised as Structural Superfamilies |
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Genome Distribution Alignment with Sequential Homologues in different GenomesFirst 10 hits are displayed in JOY alignment.You can download all hits.
1lt8a- ( 11 ) kgIleRLnageIVIGDGgfvFALekrgyVkAg--pwtPeAAvehpeaVrq
AAF238 ( 11 ) DFLKQTGGYAVIDGGLATEFERHGADLN-DPLWSAKCLVTSPHLIHT
NP-191 ( 11 ) DFLKQTGGYAVIDGGLATEFERHGADLN-DPLWSAKCLVTSPHLIHT
P56707 ( 11 ) FLHQAGRAAVIAGGLGTELQRHGADLN-DPLWSAKCLLSCPHLIRQ
AAM650 ( 11 ) FLEKCGGYEVVDGGFATELQRHGADIN-DPIWSAKCLITSPHLVTK
NP-566 ( 11 ) FLEKCGGYAVVDGGFATELQRHGADIN-DPLWSAKCLITSPHLVTK
AAG225 ( 11 ) AGGRLVLDGGLATELEANGADLN-DPLWSAKCLLSSPHLIRK
AAG225 ( 11 ) AGGRLVLDGGLATELEANGADLN-DPLWSAKCLLSSPHLIRK
AAG225 ( 11 ) GFVREAGGCAVVDGGLGTELEAHGADLH-DALWSAKCLASAPHLIRK
BAB898 ( 11 ) ALRRFVREAGGCAVVDGGLATELEAHGADLH-DELWSASCLVSAPHLIRK
AAG225 ( 11 ) VLEDLVARAGGCAVIDGGFATQLEALGADIN-DPLWSAACLITRPHLVKE
aaaaaa bb aaaaaaaa aaaa aaaaaa
1lt8a- ( 59 ) -LHreFlrAgSnVMqTFTfyased--------k------gqevNeaAAdI
AAF238 ( 59 ) -VHLDYLEAG--AISSASYQ--A-TIQGFEAKGFSREESES-LLKKSVEI
NP-191 ( 59 ) -VHLDYLEAG--AISSASYQ--A-TIQGFEAKGFSREESES-LLKKSVEI
P56707 ( 59 ) -VHLDYLENG--ADITASYQ--A-TIQGFKAKGFSDEEGEA-LLRRSVEI
AAM650 ( 59 ) -VHLDYLESG--ANITASYQ--A-TIQGFVAKGLSVGEAEN-LLRRSVEI
NP-566 ( 59 ) -VHLDYLESG--ANITASYQ--A-TIQGFVAKGLSVGEAEN-LLRRSVEI
AAG225 ( 59 ) -VHMDYLEAG--ANIIITAS--A-TIQGFESKGFSKEQSEN-LLTKSVEI
AAG225 ( 59 ) -VHMDYLEAG--ANIIITAS--A-TIQGFESKGFSKEQSEN-LLTKSVQI
AAG225 ( 59 ) -VHLDYLEAG--AIISASYQ--A-TIEGFQSRGFSRDESEE-LLRRSVHV
BAB898 ( 59 ) QVHLDYLDAN--IITSASYQ--A-TIQGFQARGLSRERSEA-LLRRSVHI
AAG225 ( 59 ) -VHMQYLEAG--VIISSSYQ--A-TIPGFIARGMSVAEAED-LLRTSVKL
aaaaaaa bbb aaaaaaaaaa
1lt8a- ( 107 ) ArqVAdegd--------------------AlVAGgVS---------q--T
AAF238 ( 107 ) ACEARNSYYDKCGTSSS---MDDKILKRPILVAASVGSYGAYLADGSEYS
NP-191 ( 107 ) ATEARNSYYDKCGTSSS---MDDKILKRPILVAASVGSYGAYLADGSEYS
P56707 ( 107 ) AREARDLYYQRCAESSSDNGDDSRLKQRPILIAGSVGSYGAYLADGSEFS
AAM650 ( 107 ) TYEAREIFYNRWTKGSWDFAYAGKS-RRPILVAASVGSYGAYLADGSEYS
NP-566 ( 107 ) TYEAREIFYNRCTKGSWDFAYAGKS-RRPILVAASVGSYGAYLADGSEYS
AAG225 ( 107 ) ALEAREMFLKEHLEKST----P---IQHPVLVAASLG-YGAYLADGSEYS
AAG225 ( 107 ) ALEAREMFLKEHLEKST----P---IQHPILVAAALG-YGAYLADGSEYS
AAG225 ( 107 ) AQEARRVFAA---EGDR---SSRRG--RPPAVAASVGSYGAYRADGSEYS
BAB898 ( 107 ) AQEARAIFAEGWSKGPY---ANHRSPRRPVLVAASIGSYGAYLADGSEYT
AAG225 ( 107 ) ANEARDEFWKSTLRKSK-----P--IYNR-LVAASIGSYGAYLADGSEYS
aaaaa bbbbbb
1lt8a- ( 126 ) psylsakseteVkkvFlqQLeVFmkknVdFLIAeyFehVeEAvwAVetLi
AAF238 ( 126 ) GIYGDSITLEKLKDFHRRRLQVLAESGADLIAFE-TPNKIEAQAFADLLE
NP-191 ( 126 ) GIYGDSITLEKLKDFHRRRLQVLAESGADLIAFE-TPNKIEAQAFADLLE
P56707 ( 126 ) GNYGDAIKSETLKDFHRRKVQILADSGVDLLAFA-VPNKLEAQAYADLLE
AAM650 ( 126 ) GIYGDSVSKETLKDFHRRRVQILAKSGADLIAFE-IPNKLEAEAYADLLE
NP-566 ( 126 ) GIYGDSVSKETLKDFHRRRVQILAKSGADLIAFE-IPNKLEAEAYADLLE
AAG225 ( 126 ) GDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVEL-E
AAG225 ( 126 ) GDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVEL-E
AAG225 ( 126 ) GDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLAQ-VYAELLE
BAB898 ( 126 ) GDYGISVTKETLKSFHRRRLQVLADAGPDLIAFT-IPNKLE----AQ---
AAG225 ( 126 ) GSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPN-QEAQALVELLE
aaaa aaaaaaaaaaaaaaaaaaa bbbb aaaaaaaaaaa3
1lt8a- ( 176 ) aS---gkpV--AATMAIGpeGDlhgvpPgeAAvrLVkag-AsIIGVNCHF
AAF238 ( 176 ) EGDVK-IPGWFSFNSKDGVN-VVSGDSIKECISIAENCEKVVAVGI-NTP
NP-191 ( 176 ) EGDVK-IPGWFSFNSKDGVN-VVSGDSIKECISIAENCEKVVAVGI-NTP
P56707 ( 176 ) EENII-TPAWFAFTSKDGNN-VVSGDSIEECGSIAESCDKVVAVGN-CTP
AAM650 ( 176 ) EEDID-IPAWFSFTSKDGVS-VPRGDSVVECAKVADSCKNVVAIGI-CTA
NP-566 ( 176 ) EEDID-IPAWFSFTSKDGVS-VPRGDSVVECAKVADSCKNVVAIGI-CTA
AAG225 ( 176 ) ECNIN-IPAWFSFNSKDGVH-IVSGDSLIECTTIADKCAKVGAVGINCTP
AAG225 ( 176 ) ECNIN-IPSWLSFNSKDGVH-VVSGDSLIECATIADKCAKVGAVGINCTP
AAG225 ( 176 ) ENGIR-IPAWFSFTSKDGVN-AASGDPINECAAVADSCPRVDAVGVNCTA
BAB898 ( 176 ) ----------------------ASGDPITECAAVADACARVGAVGVNCTA
AAG225 ( 176 ) EEKVQ-IPSWICFSSVDGKN-LCSGESFADCLKILNASEKVAVVGVNCTP
33 b bbbb aaaaaaaaa bbbbb
1lt8a- ( 220 ) DptiSlkTVklMkegLe-aaqlkahLMSQPLAYhTpdAnkqGFidL-pef
AAF238 ( 220 ) P-RFIEGLVLEIEK---VTSKPILVYPNSGESYDADRKEWVENTGVGDED
NP-191 ( 220 ) P-RFIEGLVLEIEK---VTSKPILVYPNSGESYDADRKEWVENTGVGDED
P56707 ( 220 ) P-RFIHDLILLLKK---VTAKPIVIYPNSGETYDAIRKEWGQNSGVTDED
AAM650 ( 220 ) P-RYIHALIISLRQ---MTRKPIVVYPNSGEVYDGLNKKWIKSEGS-EED
NP-566 ( 220 ) P-RYIHALIISLRQ---MTRKPIVVYPNSGEVYDGLNKKWIKSEGS-EED
AAG225 ( 220 ) P-RFIHGLIS-IRK---VTDKPILIYPNSGERYDGEKKEWVESTGVSDGD
AAG225 ( 220 ) P-RFIHGLIS-IRK---VTDKPILIYPNSGERYDGEKKEWVESTGVSDGD
AAG225 ( 220 ) P--FIHGLILSIKK---VTSKPIVVYPNSGETYVAETNEWVDSDGATGTD
BAB898 ( 220 ) P-RLVHGLILSIRK---VTSKPVVVYPNSGETYVAETKEWVESEGGASTD
AAG225 ( 220 ) --QFIEGIICEFRK---QTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKS
aaaaaaaaaaaaaaaa bbbbb 333
1lt8a- ( 268 ) pfgLeprvAtrwdIQkYAreAynlgVrYIGGccgFepyHIrAIAEeLape
AAF238 ( 268 ) FVSYVEKWMD------------AG-VSLLGGCCRTTPTTIRAIHKRLVNR
NP-191 ( 268 ) FVSYVEKWMD------------AG-VSLLGGCCRTTPTTIRAIHKRLVNR
P56707 ( 268 ) FVSYVDKWCE------------SG-ASLVGGCCRTTPDTIRGIYKIL
AAM650 ( 268 ) FVSYVSKWRD------------AG-ASLFGGCCRTTPNTIRAIAKVLSDE
NP-566 ( 268 ) FVSYVSKWRD------------AG-ASLFGGCCRTTPNTIRAIAKVLSDE
AAG225 ( 268 ) FVSYVNEWKD------------G--AVLIGGCCRTTPNTIRAIHRTLNKS
AAG225 ( 268 ) FVSYVNEWKD------------G--AALIGGCCRTTPNTIRAIHRTL
AAG225 ( 268 ) DFSRVGEWRR------------AG-AALIGGCCRTSPATVRAIARAVR
BAB898 ( 268 ) FVSCVGKWRQ------------AG-AALVGGCCRTSPATVRAISWALR
AAG225 ( 268 ) -DALAKRWQE------------AG-ASLIGGCCRTTPSTIRAVSKILKGR
333 aaaaaaaaaaaaaa bbbb aaaaaaaaaa aaa
1lt8a- ( 318 ) rg--------flPpaSekhgswgsgldmhtkpwvrarArkeywenlrias
AAF238 ( 318 ) R
NP-191 ( 318 ) R
P56707 ( 318 )
AAM650 ( 318 ) P
NP-566 ( 318 ) P
AAG225 ( 318 ) PNKQQLPAVE
AAG225 ( 318 )
AAG225 ( 318 )
BAB898 ( 318 )
AAG225 ( 318 ) TG
a 33333 33333 aaaa aaaaaa
1lt8a- ( 360 ) grpynpsmskpd
AAF238 ( 360 )
NP-191 ( 360 )
P56707 ( 360 )
AAM650 ( 360 )
NP-566 ( 360 )
AAG225 ( 360 )
AAG225 ( 360 )
AAG225 ( 360 )
BAB898 ( 360 )
AAG225 ( 360 )
Key
solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x