Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1l1sa-  (   3 )    dyrVVFhIdeddesrVllLisnVrnl-----adlesvriEVVAys-GVnV
NP-521  (   3 )     YKVVYQISEGTEQ-AVRAIGNLRNHLNGAPGT----RIVVVALGRGID-
ZP-000  (   3 )                                                      
NP-069  (   3 )      KVVFHLDMDSTSLLELCLANVNNFLNDVPEA----EVAVLANGYAVKL
NP-561  (   3 )      KIIFHIDEPNK--WPMVLENLKNVLNNAKETNRKYELEVLANSMAVFQ
NP-293  (   3 )    DLKLVLHVSEADR--WHAVLSNLVNLTALEDRP----EVRVVVNGSAVY-
ZP-000  (   3 )      KVVFHIDELEK--WSETGKNVKNLIKASPET----TIVVSVNG--I--
1L1S-A  (   3 )    DYRVVFHIDEDDESRVLLLISNVRNL-----ADLESVRIEVVAYS-GVNV
NP-276  (   3 )    DYRVVFHIDEDDESRVLLLISNVRNLM----ADLESVRIEVVAYSMGVNV
NP-111  (   3 )      KVITNVT--DPSKVGQVVRNLMNLL----REDPSIEVEVVFHVDAIT-
NP-394  (   3 )        IINVT--EMEKANGTIKSAFNLL----KDDPSAVIEIVFHADAIG-
                    bbbbbbb    aaaaaaaaaaaaa           bbbbbbb    333
 


    
1l1sa-  (  49 )    ---Lrrdse------ysgdVseLtgqgvrFCACsntlrasg-dgddLleg
NP-521  (  49 )    --FLVEGAKDDKGRPFDAPVAALAGMGVEFRVCHNSLAAFKVPEDKLLLE
ZP-000  (  49 )                       MAALASSGVEFRVCHNTLAARHISEQNLLMD
NP-069  (  49 )    F--VRAANPKLE-----DRMRELSERGVKFFVCNNALTLHGIKIEDVFDF
NP-561  (  49 )    LRELIARNTHLI-----DKIIEPAEQGVVFAVCNNSLNKFNISKDELFSF
NP-293  (  49 )    ---VLQGEHDQL-----AQMAKAAAAGVTFQICNNSLRAHDIPAANLPNW
ZP-000  (  49 )    ---AITGYLDS------ANAEFLDLQGVVFHACANAMRANHISESSLPEQ
1L1S-A  (  49 )    ---LRRDSE------YSGDVSELTGQGVRFCACSNTLRASG-DGDDLLEG
NP-276  (  49 )    ---LRRDSE------YSGDVSELTGQGVRFCACSNTLRASGMDGDDLLEG
NP-111  (  49 )    ---VLSAES------ENKDVYALLKNGINVVACRNSMIAKGMDSDSLILG
NP-394  (  49 )    ---FLSDPG------NRNAILEMLESGMDVVACRNSLVSKRIDERSLMDG
                      3            aaaaaaaaa   bbbbbaaaaaa    333    
 


    
1l1sa-  (  90 )    VdvvssGvghIvrrq-tegWayirp
NP-521  (  90 )    AKVVPAGVVEVTRLQQDEGFAYLKP
ZP-000  (  90 )    AKVVPAGVVEVARLQFNEGYAYLKP
NP-069  (  90 )    CEVVPAGVTKLVELQ-NEGYAYIKP
NP-561  (  90 )    CKVVPAGIIELAEKQ-SEGYLYIKP
NP-293  (  90 )    AQTVPAGVLALAEAQ-RGGFAYIKP
ZP-000  (  90 )    VIVVPAGVLDLVELQ-SQGYAYIKP
1L1S-A  (  90 )    VDVVSSGVGHIVRRQ-TEGWAYIRP
NP-276  (  90 )    VDVVSSGVGHIVRRQ-TEGWAYIRP
NP-111  (  90 )    VTVVNAGIYELVKKI-SEGWIYIR 
NP-394  (  90 )    VRIVNAGIYEVLKKE-SEGWLYIK 
                    bbb  aaaaaaaaa a   bbb  
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x