Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1jbia-  (   1 )    tapiaItçftrG------ldirkeka-dVlÇpggçpl-eeFsVyGn--iv
1JBI-A  (   1 )     APIAITCFTRG------LDIRKEKA-DVLCPGGCPL-EEFSVYGN--IV
NP-004  (   1 )    AAPIAITCFTRG------LDIRKEKA-DVLCPGGCPL-EEFSVYGN--IV
NP-031  (   1 )    AVPIPVTCFTRG------LDIRKEKA-DVLCPGGCSL-EEFSVFGN--IV
O42163  (   1 )    SASNAITCFTRG------LDLRKETE-DVLCPANCPL-WQFYVFGD-GI-
AAL182  (   1 )         INCDVKA------GKIIDPEF-IVKCPAGCQD-PKYHVYGT-DV-
NP-444  (   1 )         INCDVKA------GKIIDPEF-IVKCPAGCQD-PKYHVYGT-DV-
AAL578  (   1 )         INCDVKA------GKIINPEF-MVKCPAGCQD-PKYHVYGT-GV-
AAL182  (   1 )         ISCDVRA------GKITNVEF-IVKCPPGCQD-PRYHVYGA-DV-
CAA071  (   1 )         IDCDTVAYKNPIFEGPINTNI-IVQCPPGCAE-YKTKVYGSDGV-
BAB550  (   1 )         VRCDTKMKD-----RCKGSTCNRYQCPAGC-LNHKAKIFGT-LF-
                      bb                   bb bbbb           bb      
 


    
1jbia-  (  41 )    YASvSsIÇGAAVHrgVis-nsGgpVrVyslpgrenyssvdangIqSqmLs
1JBI-A  (  41 )    YASVSSICGAAVHRGVIS-NSGGPVRVYSLPGRENYSSVDANGIQSQMLS
NP-004  (  41 )    YASVSSICGAAVHRGVIS-NSGGPVRVYSLPGRENYSSVDANGIQSQMLS
NP-031  (  41 )    YASVSSICGAAVHRGVIG-TSGGPVRVYSLPGRENYSSVDANGIQSQMLS
O42163  (  41 )    YASLSSVCGAAIHRGVIT-NAGGAVRVQTLPGQENYPAVHANGIQSQVLS
AAL182  (  41 )    YTSYSSVCGAAVHSSVLD-DSGGKILVRKVAGQSGYKGSYSNGVQSLSLP
NP-444  (  41 )    YASYSSVCGAAVHSGVLD-NSGGKILVRKVAGQSGYKGSYSNGVQSLSLP
AAL578  (  41 )    YASYSSVCGAAIHSGVLD-NSGGKILVRKVAGQSGYKGSYSNGVQSLSLP
AAL182  (  41 )    YASYSSVCGAAVHSGVLD-NSGGKILVRKVAGQSGYKGSYSNGVQSLSLP
CAA071  (  41 )    YSEKSSICKAALQVGVISTNTGGMFNVALEGPKNSYEGSTKNEIESEKLS
BAB550  (  41 )    YESSSSICRAAIHYGILD-DKGGLVDITRNGKVPFFVKSERHGV-----Q
                   bb    aaaaaaaa        bbbbbbbb        bb    bbb   
 


    
1jbia-  (  90 )    rws-aSFtVtle
1JBI-A  (  90 )    RWS-ASFTVTLE
NP-004  (  90 )    RWS-ASFTVT  
NP-031  (  90 )    RWS-ASFAVT  
O42163  (  90 )    RWA-SSFSVT  
AAL182  (  90 )    RWR-ESFIV   
NP-444  (  90 )    RWR-ESFIV   
AAL578  (  90 )    RWR-ESFIV   
AAL182  (  90 )    RWR-ESFVVS  
CAA071  (  90 )    GIPTRSLRIS  
BAB550  (  90 )    SL          
                        bbbbb  
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x