Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1k8kd1  (   1 )                             millevnnr------------iIee
1k8kd2  ( 121 )                                                   fas
1k8kf-  (   2 )                                    ta------------tlrp
191148  (   2 )            MLKRNVLAAPFHRA--FTKQAELADL--ARKDPENAPMLDKQ
632436  (   2 )               TIILSFPFELA--ISKFIELSQQ--Q-PAPVEAEITGGE
128431  (   2 )                MLKRNCFASV--FEKYFQFQEE--------GK---EGE
179432  (   2 )                MLKRNCFASV--FEKYFQFQEE--------GK---EGE
179432  (   2 )                      FASV--FEKYFQFQEE--------GK---EGE
213026  (   2 )              IGLLKRNCFASV--FEKYFDFQSQ--------GEGEGEGQ
107198  (   2 )              VSLLKRHLVAAP--FLMVFEGIEA--------KK--PLPE
183976  (   2 )             LASIREVVMGAPLKIIFKHLASRTVAP------EL----DR
492682  (   2 )                              KHLASRTVAP------EL----DR
201615  (   2 )    EQRNAVLTQIASVREVVLGAPLKLLLKHLASKTVAP------NV----DK
                                                                   aa
 


    
1k8kd1  (  14 )    tLa--------lkFenaaagn-kpe------------------------a
1k8kd2  ( 124 )    vFe--------kYFqfqeegk-e-------------------------ge
1k8kf-  (   8 )    yls--------aVratLqaaL-cLenfsSqvverhnkpEVevrsskelll
191148  (   8 )    ATS---QELMAIHYRDEETIVLWPEHDRVTV------------------V
632436  (   8 )    VAANGDNTLFTIKYRDEENIFIKPSNDRVTI------------------I
128431  (   8 )    NRA-------VIHYRDDETMYVESKKDRVTV------------------V
179432  (   8 )    NRA-------VIHYRDDETMYVESKKDRVTV------------------V
179432  (   8 )    NRA-------VIHYRDDETMYVESKKDRVTV------------------V
213026  (   8 )    KRA-------VINYRNDETMYVEAKPDRVTV------------------V
107198  (   8 )    IIA--------INYRTDETFYLKPQGDNVIV------------------I
183976  (   8 )    LVA--------IMHRPNETFFLVPQADKVTV------------------A
492682  (   8 )    LVA--------IMHRPNETFFLVPQADKVTV------------------A
201615  (   8 )    LVA--------LVHRPNESFFVAPQADKVTV------------------V
                   aaa        aaaaaaaa                               
 


    
1k8kd1  (  31 )    vevtfadfdgVlYhIsNpng--dktk----VmVSIsLkfYk-----elqa
1k8kd2  ( 140 )    nravihyrddEtMyVeSk-----kdr----VtVvFSTvFkd-----dddv
1k8kf-  (  49 )    qpvtisrnekekVlIeGS-----iNS----VrVSIaVkqad-----eiek
191148  (  49 )    FSTKFREETDRIFGKVFLQEFVDARRRP-AIQTAPQVLFSYRDPPLEIRD
632436  (  49 )    FETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSH-EPPLELKR
128431  (  49 )    FSTVFKDDDDVVIGKVFMQEFKEGRR---ASHTAPQVLFSHREPPLELKD
179432  (  49 )    FSTVFKDDDDVVIGKVFMQEFKEGRR---ASHTAPQVLFSHREPPLELKD
179432  (  49 )    FSTVFKDDDDVVIGKVFMQEFKEGRR---ASHTAPQVLFSHREPPLELKD
213026  (  49 )    FSTIFRDEDDVVLGKVFMQELREGRR---ASHTAPQVLFSHREPPLELAN
107198  (  49 )    FDIAFKDADDVILSKIFLQSFVDVRK---TISNVPSITFSQKDPPLELKG
183976  (  49 )    FPMRFKDSVDTILATSFLKEFVEARRAA-ALNTAPSCSWSP-TAPQELEG
492682  (  49 )    FPMRFKDSVDTILATSFLKEFVEARRAA-ALNTAPSCSWSP-TAPQELEG
201615  (  49 )    YPMRFQDSIDIVLATSFLQEFVEARRTS-ALNNAPSCLWSP-VPPLELKG
                     bbbb     bbbbb              bbbbbb          aaa 
 


    
1k8kd1  (  70 )    hgadelLkr---vY-----gsylvn-------pes------------gyn
1k8kd2  ( 176 )    viGkvfMqe---fkegrrashtapqVlfshrePpleLkdtdAavgdniGY
1k8kf-  (  85 )    ilChkfMrf---mmmrAenffILrr------kpve------------gyd
191148  (  85 )    IQGIQK--GDDFGF-----VTFVLFERHF-T-PQNREDCISHIQ---VFR
632436  (  85 )    LYQPPKVAEQSRRF-----ITFVLFPRHFQT-KELQFHSICQLT---LFR
128431  (  85 )    -TD-AAVGD-NIGY-----ITFVLFPRHT-N-ATARDNTINLIH---TFR
179432  (  85 )    -TD-AAVGD-NIGY-----ITFVLFPRHT-N-ASARDNTINLIH---TFR
179432  (  85 )    -TD-AAVGD-NIGY-----ITFVLFPRHT-N-ASARDNTINLIH---TFR
213026  (  85 )    -TG-ARVGE-NIGY-----VTFVLFPRHT-A-KETRDNTINLIH---MFR
107198  (  85 )    VKG-VRAGQANHGF-----VSFVLFPAHI-K-KP--QESADLIQ---TFR
183976  (  85 )    APK-ETLSA-NAGF-----VTFVIFPRHV-E-GKKLDRTVWNLS---TFH
492682  (  85 )    APK-ETLSA-NAGF-----VTFVIFPRHV-E-GKKLDRTVWNLS---TFH
201615  (  85 )    VPS-DALNA-NAGF-----VTFVVFPRHV-E-GKKLDKTVWSLL---TFH
                     aaaaaaa   aa                                    
 


    
1k8kd1  (  93 )    VSLlYdLenLpa-skdsivhqAGmLkrNC                     
1k8kd2  ( 223 )    ItfvLfprhTnasardntinlIhtFrdyLhyhIkcskayihtrmraktsd
1k8kf-  ( 114 )    ISFlItNfhteqmykhkLvdfVIhFMeeIdkeIsemklsvnararivaee
191148  ( 114 )    NTLHFHIKASKAYMHQRMRKRVADFQKVL                     
632436  ( 114 )    NYFHYHIKCSKAYMHSRMRFRVDSFIKVL                     
128431  ( 114 )    DYLHYHIKCSKAYIHTRMRAKTSDFLKVL                     
179432  ( 114 )    DYLHYHIKCSKAYIHTRMRAKTSDFLKVL                     
179432  ( 114 )    DYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDA              
213026  ( 114 )    DYLHYHIKCSKAYIHSRMRAKTTEFLKVL                     
107198  ( 114 )    DYLHYHIKCAKGYMHTSMRNRVESLIQVL                     
183976  ( 114 )    AYVSYHVKFSEGFMHTRMRRRVESMIQAL                     
492682  ( 114 )    AYVSYHVK-----VHILY                                
201615  ( 114 )    AYVSYHVKCSEGFMHTRMRRRVETLIQAL                     
                   bbbbb         aaaaaaaa  aaaa                      
 


    
1k8kd1  (     )                
1k8kd2  ( 273 )    flkvlnrarpda
1k8kf-  ( 164 )    flknf       
191148  ( 164 )                
632436  ( 164 )                
128431  ( 164 )                
179432  ( 164 )                
179432  ( 164 )                
213026  ( 164 )                
107198  ( 164 )                
183976  ( 164 )                
492682  ( 164 )                
201615  ( 164 )                
                               
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x