Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1a6da3  ( 146 )                        tddatLrkiAltaLsgknTg--lsndfLAd
1oela3  ( 137 )    pc------------------sdskaIaqvGtisAn--------sdetVGk
107549  ( 137 )      KAMLEDIAILTGGTVISEETGLKLENATMDML-GTAE-KVTVDK---D
116892  ( 137 )           DIAILTGGAVISEETGLNLENTTMDML-GTAE-KVRVDK---D
499504  ( 137 )                              EDAKMDML-GSAD-KVTVNK---D
216733  ( 137 )                              ENATMAYL-GQAA-RITIDK---D
502001  ( 137 )       AMLEDIAILTGGTVISEEKGYRLENATLDYL-GQAE-RIIVDK---D
231357  ( 137 )                              ENATLEYL-GTAE-KINIDK---D
155941  ( 137 )                              ESATLSDL-GQAS-SVIIDK---D
306376  ( 137 )                              ESATIQDL-GQAS-SVIIDK---D
156446  ( 137 )          KDIAILTGGQVISEELGLSLENAEVEFL-GKAG-RIVIDK---D
212055  ( 137 )          KDIAVLTGGQVISEELGLSLENAEVEFL-GKA--KIVIDK---D
                                         aaaaaaaaaaa            aaaaa
 


    
1a6da3  ( 174 )    lVvkAVn-------aVAevr-dgktiVdtanIkVd-kknggsvnd--Tqf
1oela3  ( 161 )    lIaeAMd-------kvg-------kegv---ItVe-dGtgl---q--del
107549  ( 161 )    NTT-IVNGAGNKE-GIASR-ITQ-IKAQIENTTSDYD-REK-LQERLAKL
116892  ( 161 )    NTT-IVNGAGNKE-GIASR-ITQ-IKAQIENTTSDYD-REK-LQERLAKL
499504  ( 161 )    NTT-IVKGNGDKA-AIESR-IGQ-IKAQIETTTSDYD-KEK-LQERLAKL
216733  ( 161 )    NTT-IVEGKGKQE-EIKAR-INE-IKGQIEKSTSDYD-TEK-LQERLAKL
502001  ( 161 )    NTT-IVGGKG-DPAQIKAR-ANQ-IRQQIEETTSDYD-REK-LQERLAKL
231357  ( 161 )    NTT-VVNGSGLKD-NIVAR-VNQ-IKSQMENTTSDYD-REK-LQERLAKL
155941  ( 161 )    NTT-IVNGAGEKS-AIDAR-IIQ-IKAQIAETTSDYD-KEK-LQERLAKL
306376  ( 161 )    NTT-IVNGAGEKA-NIDAR-VNQ-IKAQIAETTSDYD-REK-LQERLAKL
156446  ( 161 )    NTT-IVDGKG-HSHDVKDR-VAQ-IKTQIASTTSDYD-KEK-LQERLAKL
212055  ( 161 )    NTT-IVDGKG-HSHDVKDR-VAQ-IKTQIASTTSDYD-KEK-LQERLAKL
                   aaaaaaa       aa               bbbb b           bb
 


    
1a6da3  ( 213 )    is----------avsIlIr--Gg--tdhvVseVerALnd-AIrvVaitke
1oela3  ( 188 )    dvvervaklaggvAvIkVG--aa--tevemkekkarVed-AlhaTraaVe
107549  ( 188 )    AG-G---------VA-VLYVGAASEVE--MKEKKDRVEDA-LSATRAAIE
116892  ( 188 )    AG-G---------VA-VLYVGAASEVE--MKEKKDRVEDP-LSPTRPPIE
499504  ( 188 )    AG-G---------VA-VLYVGAPSEVE--MKEKKDRVDDA-LHATRAAIE
216733  ( 188 )    SG-G---------VA-VLKIGASTEVE--MKEKKARVEDA-LHATRAAVQ
502001  ( 188 )    AG-G---------VA-VLKIGAATEPE--MKEKKARVEDA-LHATRAAVE
231357  ( 188 )    SG-G---------VA-IMYIGAATEVE--MKEKKDRVDDA-LHATRAAVE
155941  ( 188 )    SG-G---------VA-VIKVGAATETE--MKEKKDRVDDA-LSATKAAVE
306376  ( 188 )    SG-G---------VA-VIKVGATTETE--MKEKKDRVDDA-LSATKAAVE
156446  ( 188 )    SG-G---------VA-VIKVGAASEVE--MKEKKDRVDDA-LSATKAAVE
212055  ( 188 )    SG-G---------VA-VIKVGAASEVE--MKEKKDRVDDA-LSATKAAVE
                   b            bbbbb           aaaaaaaaaa aaaaaaaaaa
 


    
1a6da3  ( 401 )    dgk
1oela3  ( 409 )    e  
107549  ( 409 )    EGT
116892  ( 409 )    EGT
499504  ( 409 )    EGT
216733  ( 409 )    EGI
502001  ( 409 )    EGI
231357  ( 409 )    EGI
155941  ( 409 )    EGI
306376  ( 409 )    EGI
156446  ( 409 )    EGI
212055  ( 409 )    EGI
                      
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x