Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1bm8--  (   4 )    qiysarysgvdVyefihstgs---IMKRkkddwVNAthILkAAnfakakr
NP-010  (   4 )    QIYSARYSGVDVYEFIHSTGS---IMKRKKDDWVNATHILKAANFAKAKR
P39679  (   4 )    QIYSAKYSGVDVYEFIHPTGS---IMKRKADNWVNATHILKAAKFPKAKR
NP-593  (   4 )     VHVAVYSGVEVYECFIKGVS---VMRRRRDSWLNATQILKVADFDKPQR
NP-595  (   4 )    QIHKITYSGVEVFEYTINGFP---LMKRCHDNWLNATQILKIAELDKPRR
160224  (   4 )     IEIATYSETDVYECYIRGFETKIVMRRTKDDWINITQVFKIAQFSKTKR
AAM279  (   4 )            GSLCYQVEAKGVC---VARREDNHMINGTKLLNVAGMTRGRR
P36011  (   4 )            GSLCYQVEAKGVC---VARREDNGMINGTKLLNVAGMTRGRR
AAB069  (   4 )            GSLCFQVEARGIC---VARREDNAMINGTKLLNVAGMTRGRR
CAB456  (   4 )            GTLCFQVEARGIC---VARREDNDMINGTKLLNVAGMTRGRR
NP-012  (   4 )             TICYQVEANGIS---VVRRADNNMINGTKLLNVTKMTRGRR
                    bbbbbb  bbbbbbb    b   bbbb     bbaaaaaaa    aaaa
 


    
1bm8--  (  51 )    trilekeVlkethekvqggfgkYqgTWVplniAkqlAekfsVydqLkpLF
NP-010  (  51 )    TRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLF
P39679  (  51 )    TRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLF
NP-593  (  51 )    TRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPIL
NP-595  (  51 )    TRILEKFAQKGLHEKIQGGCGKYQGTWVPSERAVELAHEYNVFDLIQPLI
160224  (  51 )    TKILEKESNDMQHEKVQGGYGRFQGTWIPLDSAKFLVNKYEIID      
AAM279  (  51 )    DGILKSE---KVRHVVKIGPMHLKGVWIPYERALDFANKEKITDLLYPLF
P36011  (  51 )    DGILKSE---KVRNVVKIGPMHLKGVWIPFDRALEFANKEKITDLLYPLF
AAB069  (  51 )    DGILKSE---KVRHVVKIGPMHLKGVWIPFERALDFANKEKITELLYPLF
CAB456  (  51 )    DGILKGE---KLRHVVKAGAMHLKGVWIPYDRALEFANKEKIIDLLFPLF
NP-012  (  51 )    DGILRSE---KVREVVKIGSMHLKGVWIPFERAYILAQREQILDHLYPLF
                   aaaaaaa      bbb        bbbb aaaaaaaaaa   aaaaaaaa
 


    
1bm8--  ( 101 )    df
NP-010  ( 101 )    DF
P39679  ( 101 )    DF
NP-593  ( 101 )    S 
NP-595  ( 101 )    EY
160224  ( 101 )      
AAM279  ( 101 )      
P36011  ( 101 )      
AAB069  ( 101 )      
CAB456  ( 101 )      
NP-012  ( 101 )      
                   a 
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x