Home About pass2 Superfamily list Align query Useful tools Search Help Lab page		Protein Alignments organised as Structural Superfamilies

Genome Distribution

Alignment with Sequential Homologues in different Genomes

 
1a1x--  (   3 )       agedvgapPdhLwvhqegiYrDeyqrtWvA-vveeet-s-----flr
1jsg--  (   4 )    cptlgeavtdhPdrLwAwekfvYLDekqhaWlPltieikdrl-----qlr
AAF128  (   4 )                                      RALQRA-S------LK
XP-138  (   4 )              VPLCLIIIRHGIFEDEFHRKWIV-AKVQTC-S------YS
XP-139  (   4 )               PHILVFTRQGIYEDEHHKPWMV-AKLEAC-P------HP
BAA767  (   4 )            GVPPGRLWIQRPGIYEDEEGRTWVT-VVVRFN-PSRREWARA
NP-004  (   4 )            GVPPGRLWIQRPGIYEDEEGRTWVT-VVVRFN-PSRREWARA
1A1X    (   4 )         EDVGAPPDHLWVHQEGIYRDEYQRTWVA-VVEEET-S-----FLR
1JNP    (   4 )              HPNRLWIWEKHVYLDEFRRSWLP-VVIKSN-E-----KFQ
NP-033  (   4 )              HPNRLWIWEKHVYLDEFRRSWLP-VVIKSN-E-----KFQ
NP-068  (   4 )    PT-LGEAVTDHPDRLWAWEKFVYLDEKQHAWLP-LTIEIK-DR---LQLR
                                bbbbbb  bbbb    bbbb bbbb          bb
 


    
1a1x--  (  43 )    ArVqqiqvplgdaarpshL----l-------tsqLplmWqlypeerYmDn
1jsg--  (  49 )    VlLrredvvlgrpmtptqI----g-------pslLpimWqlypdgrYrSs
AAF128  (  49 )    LSGHLIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGG
XP-138  (  49 )    PYCGGTGRCITVHLWHLTRFPQEFIP--PINYHSLPWMWTLQSMNIYRGA
XP-139  (  49 )    PFWDRLGVCITVHLWQ---------------------MWRLDSMNTHWRT
BAA767  (  49 )    SQGSRYEPSITVHLWAVHT--RELLSSGQMPFSQLPAVWQLYPRRKYRAA
NP-004  (  49 )    SQGSRYEPSITVHLWAVHT--RELLSSGQMPFSQLPAVWQLYPGRKYRAA
1A1X    (  49 )    ARVQQIQVPLGDAARPSH-------------TSQLPLMWQLYPEERYMDN
1JNP    (  49 )    VILRQEDVTLGEAMSPSQ-------------LVPYELMWQLYPKDRYRSA
NP-033  (  49 )    VILRQEDVTLGEAMSPSQ-------------LVPYELMWQLYPKDRYRSC
NP-068  (  49 )    VLLRREDVVLGRPMTQIG-------------PSLLPIMWQLYPDGRYRSS
                   bbbb           aaaa                  bbbb     bbb 
 


    
1a1x--  (  82 )    nsrlWqIqhhlmvrgvqELlLkllpdd
1jsg--  (  88 )    dssfWrlvyHikidgvedMlLellpdd
AAF128  (  88 )    --TYWRLLDHSQMGDTLQLILDIV   
XP-138  (  88 )    DSKQWRLLTHVQ               
XP-139  (  88 )    DAMLWRLVAQSQVGDTEQLILML    
BAA767  (  88 )    DSSFWEIADHGQIDSMEQLVLTYQPE 
NP-004  (  88 )    DSSFWEIADHGQIDSMEQLVLTYQPE 
1A1X    (  88 )    NSRLWQIQHHLMVRGVQELLLKLLPDD
1JNP    (  88 )    DSMYWQILYHIKFRDVEDMLLELI   
NP-033  (  88 )    DSMYWQILYHIKFRDVEDMLLELI   
NP-068  (  88 )    DSSFWRLVYHIKIDGVEDMLLELLPDD
                      bbbbbbbbbb  bbbbbbbb    
 


    
 


Key
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand				blue            x
3 - 10 helix				maroon          x
hydrogen bond to main chain amide    	bold            x
hydrogen bond to mainchain carbonyl     underline	x
disulphide bond                         cedilla         ç
positive phi				italic		x