superfamily list




List of Single Member Superfamilies According To The Structual Classes

All Alpha Proteins (all a) 
SMS-Code    Memberes  Seq_Len   Superfamily Name 


01.01.003	 1 	77	 Chaperone J-domain 	(sms-entry:1bq0--)

01.01.004	 1 	76	 Theta subunit of DNA polymerase III 	(sms-entry:1du2a-)

01.01.005	 1 	86	 Effector domain of the protein kinase pkn/prk1 	(sms-entry:1cxzb-)

01.01.007	 1 	72	 Eukaryotic DNA topoisomerase I, dispensable insert domain 	(sms-entry:1a36a1)

01.01.008	 1 	50	 Epsilon subunit of F1F0-ATP synthase C-terminal domain 	(sms-entry:1aqt-1)

01.01.009	 1 	86	 Fe,Mn superoxide dismutase (SOD), N-terminal domain 	(sms-entry:1bsma1)

01.01.012	 1 	81	 Methylated DNA-protein cysteine methyltransferase, C-terminal domain 	(sms-entry:1mgta1)

01.01.013	 1 	128	 DNA-binding domain from the dead ringer protein 	(sms-entry:1c20a-)

01.01.014	 1 	99	 TnsA endonuclease, C-terminal domain 	(sms-entry:1f1za1)

01.01.016	 1 	70	 Ribosomal protein L11, C-terminal domain 	(sms-entry:1mmsa1)

01.01.017	 1 	46	 N-terminal Zn binding domain of HIV integrase 	(sms-entry:1aub--)

01.01.018	 1 	55	 RNA polymerase subunit RPB10 	(sms-entry:1ef4a-)

01.01.019	 1 	48	 DNA helicase RuvA subunit, C-terminal domain 	(sms-entry:1cuk-1)

01.01.020	 1 	45	 UBA domain 	(sms-entry:1dv0a-)

01.01.021	 1 	93	 N-terminal domain of phosphatidylinositol transfer protein sec14p 	(sms-entry:1aua-1)

01.01.022	 1 	114	 Elongation factor TFIIS domain 2 	(sms-entry:1enwa-)

01.01.024	 1 	107	 Spectrin repeat 	(sms-entry:2spca-)

01.01.025	 1 	102	 Enzyme IIa from lactose specific PTS, IIa-lac 	(sms-entry:1e2aa-)

01.01.026	 1 	111	 Succinate dehydrogenase/fumarate reductase C-terminal domain 	(sms-entry:1chua1)

01.01.027	 1 	102	 beta-Tubulin binding post-chaperonin cofactor Rbl2p 	(sms-entry:1qsda-)

01.01.029	 1 	41	 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 	(sms-entry:1ebdc-)

01.01.030	 1 	40	 Protozoan pheromone proteins 	(sms-entry:2erl--)

01.01.031	 1 	86	 Acyl-CoA binding protein 	(sms-entry:1aca--)

01.01.032	 1 	110	 Second domain of FERM 	(sms-entry:1ef1a1)

01.01.033	 1 	81	 Kix domain of CBP (creb binding protein) 	(sms-entry:1kdxa-)

01.01.034	 1 	81	 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 	(sms-entry:1lre--)

01.01.035	 1 	67	 Thermostable subdomain from chicken villin headpiece 	(sms-entry:1qqva-)

01.01.036	 1 	67	 TAF(II)230 TBP-binding fragment 	(sms-entry:1tbaa-)

01.01.038	 1 	68	 p8-MTCP1 	(sms-entry:1hp8--)

01.01.039	 1 	137	 T4 endonuclease V 	(sms-entry:2end--)

01.01.040	 1 	131	 Lysin 	(sms-entry:2lisa-)

01.01.041	 1 	124	 ATP syntase (F1-ATPase), gamma subunit 	(sms-entry:1mabg-)

01.01.042	 1 	83	 Zn2+ DD-carboxypeptidase, N-terminal domain 	(sms-entry:1lbu-1)

01.01.043	 1 	73	 HMG-box 	(sms-entry:1qrva-)

01.01.045	 1 	137	 Diol dehydratase, gamma subunit 	(sms-entry:1diog-)

01.01.046	 1 	162	 Methane monooxygenase hydrolase, gamma subunit 	(sms-entry:1mtyg-)

01.01.047	 1 	95	 Mitochondrial import receptor subunit Tom20 	(sms-entry:1om2a-)

01.01.048	 1 	136	 Apolipoprotein 	(sms-entry:1or3a-)

01.01.049	 1 	146	 Aspartate receptor, ligand-binding domain 	(sms-entry:1vls--)

01.01.051	 1 	114	 Hemerythrin 	(sms-entry:2hmqa-)

01.01.053	 1 	155	 Acyl-CoA dehydrogenase (flavoprotein), C-terminal domain 	(sms-entry:1egda1)

01.01.054	 1 	94	 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 	(sms-entry:1nsgb-)

01.01.055	 1 	200	 Proteasome activator reg(alpha) 	(sms-entry:1avo-1)

01.01.059	 1 	152	 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 	(sms-entry:1a8h-1)

01.01.061	 1 	85	 Colicin E immunity proteins 	(sms-entry:1cei--)

01.01.062	 1 	66	 Retrovirus capsid protein C-terminal domain 	(sms-entry:1a8o--)

01.01.064	 1 	139	 Bromodomain 	(sms-entry:1eqfa1)

01.01.065	 1 	59	 ROP protein 	(sms-entry:1nkd--)

01.01.066	 1 	62	 Homodimeric domain of signal transducing histidine kinase 	(sms-entry:1b3qa1)

01.01.067	 1 	46	 Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 	(sms-entry:1r2aa-)

01.01.068	 1 	46	 Transcription factor IIA (TFIIA), N-terminal domain 	(sms-entry:1ytfb1)

01.01.069	 1 	37	 Ectatomin, A & B s 	(sms-entry:1ecia-)

01.01.070	 1 	35	 SinR repressor (dimerisation domain)-SinI anti-repressor complex 	(sms-entry:1b0na1)

01.01.073	 1 	61	 Signal peptide-binding domain 	(sms-entry:1dula-)

01.01.074	 1 	74	 Binding domain of Skn-1 	(sms-entry:1sknp-)

01.01.075	 1 	80	 Helix-loop-helix DNA-binding domain 	(sms-entry:1am9a-)

01.01.077	 1 	108	 Insect pheromon/odorant-binding proteins 	(sms-entry:1c3ya-)

01.01.078	 1 	1	 Cloroperoxidase 	(sms-entry:1cpo-1)

01.01.079	 1 	108	 Calponin-homology domain, CH-domain 	(sms-entry:1bkra-)

01.01.080	 1 	135	 Domain of poly(ADP-ribose) polymerase 	(sms-entry:1a26-1)

01.01.081	 1 	88	 MDM2 	(sms-entry:1ycqa-)

01.01.083	 1 	64	 Disulphide-bond formation facilitator (DSBA), insertion domain 	(sms-entry:1fvka1)

01.01.084	 1 	133	 Glutathione S-transferases, C-terminal domain 	(sms-entry:6gsva1)

01.01.085	 1 	90	 Methionine synthase domain 	(sms-entry:1bmta1)

01.01.086	 1 	70	 Pyrimidine nucleoside phosphorylase N-terminal domain 	(sms-entry:1brwa1)

01.01.087	 1 	177	 STAT 	(sms-entry:1bg1a1)

01.01.088	 1 	124	 Syntaxin 1A N-terminal domain 	(sms-entry:1ez3a-)

01.01.089	 1 	131	 N-terminal domain of cbl (N-cbl) 	(sms-entry:2cbla2)

01.01.090	 1 	148	 Transferrin receptor ectodomain, C-terminal domain 	(sms-entry:1de4c1)

01.01.091	 1 	77	 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 	(sms-entry:1eo0a-)

01.01.092	 1 	66	 Anaphylotoxins (complement system) 	(sms-entry:1c5a--)

01.01.093	 1 	79	 Cytochrome c oxidase subunit h 	(sms-entry:2occh-)

01.01.094	 1 	91	 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 	(sms-entry:1rzl--)

01.01.095	 1 	31	 p53 tetramerization domain 	(sms-entry:1aie--)

01.01.096	 1 	87	 Domain of early E2A DNA-binding protein, ADDBP 	(sms-entry:1anv-1)

01.01.097	 1 	67	 Prokaryotic DNA-bending protein 	(sms-entry:1b8za-)

01.01.098	 1 	113	 CO dehydrogenase ISP C-domain like 	(sms-entry:1alo-1)

01.01.099	 1 	79	 Protein HNS-dependent expression A; HdeA 	(sms-entry:1dj8a-)

01.01.100	 1 	81	 Chemotaxis receptor methyltransferase CheR, N-terminal domain 	(sms-entry:1af7-1)

01.01.102	 1 	78	 DNA helicase RuvA subunit, middle domain 	(sms-entry:1cuk-2)

01.01.103	 1 	81	 C-terminal domain of RNA polymerase alpha subunit 	(sms-entry:1coo--)

01.01.104	 1 	70	 DNA repair protein Rad51, N-terminal domain 	(sms-entry:1b22a-)

01.01.105	 1 	89	 Barrier-to-autointegration factor, BAF 	(sms-entry:1qcka-)

01.01.106	 1 	82	 DNA polymerase beta, N-terminal (8 kD)-domain 	(sms-entry:1bpya1)

01.01.107	 1 	108	 5' to 3' exonuclease, C-terminal subdomain 	(sms-entry:1a76-1)

01.01.108	 1 	107	 MRF-2 DNA-binding domain 	(sms-entry:1bmy--)

01.01.109	 1 	81	 HRDC domain from RecQ helicase 	(sms-entry:1d8ba-)

01.01.110	 1 	110	 lambda integrase-like, N-terminal domain 	(sms-entry:4crxa1)

01.01.111	 1 	123	 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 	(sms-entry:1zyma1)

01.01.113	 1 	142	 Hepatitis B viral capsid (hbcag) 	(sms-entry:1qgta-)

01.01.114	 1 	153	 Apolipophorin-III 	(sms-entry:1aep--)

01.01.116	 1 	323	 Annexin 	(sms-entry:1axn--)

01.01.117	 1 	121	 Transducin (alpha subunit), insertion domain 	(sms-entry:1cipa1)

01.01.118	 1 	145	 Thermolysin-like metalloproteases, C-terminal domain 	(sms-entry:1ezm-1)

01.01.119	 1 	107	 Wiscott-Aldrich syndrome protein, WASP, C-terminal domain 	(sms-entry:1ej5a-)

01.01.120	 1 	128	 C-terminal domain of alpha and beta subunits of F1 ATP synthase 	(sms-entry:1skyb1)

01.01.121	 1 	105	 N-terminal domain of the delta subunit of the F1F0-ATP synthase 	(sms-entry:1abv--)

01.01.122	 1 	149	 Functional domain of the splicing factor Prp18 	(sms-entry:1dvka-)

01.01.123	 1 	145	 Retrovirus capsid protein, N-terminal core domain 	(sms-entry:1ak4c-)

01.01.125	 1 	140	 Ribosomal protein S7 	(sms-entry:1rss--)

01.01.126	 1 	76	 Iron-dependent represor protein, dimerization domain 	(sms-entry:2dtr-2)

01.01.127	 1 	93	 DEATH domain 	(sms-entry:1cy5a-)

01.01.128	 1 	131	 Antitermination factor NusB 	(sms-entry:1eyva-)

01.01.129	 1 	102	 N-terminal domain of DnaB helicase 	(sms-entry:1b79a-)

01.01.130	 1 	101	 FliG C-terminal domain 	(sms-entry:1qc7a-)

01.01.131	 1 	101	 Guanido kinases 	(sms-entry:1qh4a1)

01.01.132	 1 	143	 Scaffolding protein gpD of bacteriophage procapsid 	(sms-entry:1al01-)

01.01.133	 1 	99	 Hemocyanin, N-terminal domain 	(sms-entry:1lla-1)

01.01.135	 1 	204	 DBL homology domain 	(sms-entry:1dbha1)

01.01.136	 1 	132	 LigA subunit of an aromatic-ring-opening dioxygenase LigAB 	(sms-entry:1b4ua-)

01.01.137	 1 	276	 Methyl-coenzyme M reductase alpha and beta  C-terminal domain 	(sms-entry:1mroa1)

01.01.138	 1 	124	 Transcription factor STAT-4 N-domain 	(sms-entry:1bgf--)

01.01.139	 1 	128	 Regulator of G-protein signalling, RGS 	(sms-entry:1agre-)

01.01.140	 1 	153	 Carbamoyl phosphate synthetase, large subunit connection domain 	(sms-entry:1a9xa1)

01.01.142	 1 	158	 Influenza virus matrix protein M1 	(sms-entry:1aa7a-)

01.01.144	 1 	163	 Anticodon-binding (C-terminal) domain of glutamyl-tRNA synthetase (GluRS) 	(sms-entry:1gln-1)

01.01.145	 1 	212	 R1 subunit of ribonucleotide reductase, N-terminal domain 	(sms-entry:1rlr-1)

01.01.146	 1 	271	 FAD-binding (C-terminal) domain of DNA photolyase 	(sms-entry:1qnf-1)

01.01.148	 1 	70	 Uteroglobin-like 	(sms-entry:1utg--)

01.01.150	 1 	510	 Seven-hairpin glycosyltransferases 	(sms-entry:1dl2a-)

01.01.153	 1 	435	 Citrate synthase 	(sms-entry:1csh--)

01.01.154	 1 	405	 Cytochrome P450 	(sms-entry:1phb--)

01.01.155	 1 	73	 FIS-like 	(sms-entry:1fipa-)

01.01.156	 1 	101	 Trp repressor 	(sms-entry:1jhga-)

01.01.157	 1 	75	 MHC class II-associated invariant chain ectoplasmic trimerization domain 	(sms-entry:1iiea-)

01.01.158	 1 	401	 Aldehyde ferredoxin oxidoreductase, C-terminal domains 	(sms-entry:1b25a1)

01.01.160	 1 	305	 sigma70 subunit fragment from RNA polymerase 	(sms-entry:1sig--)

01.01.161	 1 	300	 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 	(sms-entry:1dg3a1)

01.01.162	 1 	215	 Bluetongue virus coat protein vp7 (BTV-10 vp7), alpha-helical domain 	(sms-entry:1bvp11)

01.01.164	 1 	439	 Ras GEF 	(sms-entry:1bkds-)

01.01.167	 1 	195	 Sec7 domain 	(sms-entry:1pbv--)

01.01.169	 1 	450	 Bacterial muramidases 	(sms-entry:1qsaa1)

01.01.170	 1 	323	 Protein prenylyltransferase 	(sms-entry:1d8da-)

01.01.171	 1 	217	 14-3-3 protein 	(sms-entry:1qjaa-)

01.01.172	 1 	117	 Tetratricopeptide repeat (TPR) 	(sms-entry:1elwa-)

01.01.174	 1 	157	 Clathrin heavy-chain linker domain 	(sms-entry:1bpoa1)

01.01.175	 1 	105	 Cytochrome c oxidase subunit E 	(sms-entry:2occe-)

01.01.177	 1 	217	 gene 59 helicase assembly protein 	(sms-entry:1c1ka-)

01.01.178	 1 	158	 delta prime subunit of DNA polymerase III, C-terminal domain 	(sms-entry:1a5t-1)

01.01.179	 1 	132	 Tetracyclin repressor (Tet-repressor, TetR), C-terminal domain 	(sms-entry:2tct-2)

01.01.180	 1 	236	 Nuclear receptor ligand-binding domain 	(sms-entry:1exaa-)

01.01.182	 1 	192	 Serum albumin 	(sms-entry:1ao6a1)

01.01.187	 1 	156	 Peridinin-chlorophyll protein 	(sms-entry:1pprm1)

01.01.188	 1 	214	 Heme oxygenase-1 (HO-1) 	(sms-entry:1qq8a-)

01.01.190	 1 	99	 Fungal elicitin, plant patogen 	(sms-entry:1bxm--)

01.01.191	 1 	57	 Methanol dehydrogenase, light  	(sms-entry:1b2nb-)

01.01.192	 1 	58	 Transducin (heterotrimeric G protein), gamma  	(sms-entry:1gotg-)

01.01.193	 1 	88	 Fe-only hydrogenase smaller subunit 	(sms-entry:1hfes-)

01.01.194	 1 	87	 Moesin tail domain 	(sms-entry:1ef1c-)

01.01.195	 1 	32	 Nuclear receptor coactivator Src-1 	(sms-entry:2prgc-)

01.01.196	 1 	29	 Proteinase A inhibitor IA3 	(sms-entry:1dpjb-)




All Beta Proteins



SMS-Code    Memberes  Seq_Len   Superfamily Name 



01.02.002	 1 	102	 Fibronectin type III 	(sms-entry:2hft-1)

01.02.003	 1 	80	 PKD domain 	(sms-entry:1b4ra-)

01.02.004	 1 	114	 beta-Galactosidase/glucuronidase domain 	(sms-entry:1bgla1)

01.02.005	 1 	112	 Transglutaminase 	(sms-entry:1evua2)

01.02.007	 1 	113	 Actinoxanthin-like 	(sms-entry:1noa--)

01.02.009	 1 	133	 Clathrin adaptor appendage domain 	(sms-entry:1qtsa1)

01.02.011	 1 	112	 Purple acid phosphatase, N-terminal domain 	(sms-entry:4kbpa1)

01.02.012	 1 	124	 Superoxide reductase-like 	(sms-entry:1dqia-)

01.02.013	 1 	94	 Invasin/intimin cell-adhesion fragments 	(sms-entry:1cwva1)

01.02.014	 1 	155	 Diphtheria toxin, C-terminal domain 	(sms-entry:1ddt-1)

01.02.017	 1 	130	 Receptor domain from alpha-2-macroglobulin 	(sms-entry:1ayoa-)

01.02.018	 1 	184	 p53-like transcription factors 	(sms-entry:1a3qa2)

01.02.019	 1 	187	 Cytochrome f, large domain 	(sms-entry:1ci3m1)

01.02.020	 1 	256	 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 	(sms-entry:1bw8a-)

01.02.021	 1 	110	 Starch-binding domain 	(sms-entry:1qhoa2)

01.02.022	 1 	142	 VHL 	(sms-entry:1vcbc-)

01.02.023	 1 	128	 Transthyretin (synonymprealbumin) 	(sms-entry:: 1eta1-)

01.02.024	 1 	309	 Aromatic compound dioxygenase 	(sms-entry:1dmha-)

01.02.025	 1 	74	 alpha-Amylase inhibitor tendamistat 	(sms-entry:1hoe--)

01.02.028	 1 	91	 Periplasmic chaperone C-domain 	(sms-entry:1pdka2)

01.02.029	 1 	94	 Pollen allergen PHL P 2 	(sms-entry:1who--)

01.02.030	 1 	110	 Rab geranylgeranyltransferase alpha-subunit, insert domain 	(sms-entry:1dcea2)

01.02.031	 1 	152	 TRAF domain 	(sms-entry:1czya1)

01.02.032	 1 	81	 Neurophysin II 	(sms-entry:1npoa-)

01.02.038	 1 	142	 Calpain large subunit, middle domain (domain III) 	(sms-entry:1df0a2)

01.02.040	 1 	131	 Ecotin, trypsin inhibitor 	(sms-entry:1slua-)

01.02.041	 1 	184	 Phosphatidylethanolamine binding protein 	(sms-entry:1beha-)

01.02.044	 1 	228	 F-MuLV receptor-binding domain 	(sms-entry:1aol--)

01.02.045	 1 	195	 Adenovirus fiber protein head domain (knob domain) 	(sms-entry:1qhva-)

01.02.046	 1 	149	 TNF-like 	(sms-entry:1dg6a-)

01.02.047	 1 	111	 Spermadhesin, CUB domain 	(sms-entry:1sfp--)

01.02.048	 1 	101	 Chondroitinase AC, C-terminal domain 	(sms-entry:1cb8a2)

01.02.049	 1 	207	 Osmotin, thaumatin-like protein 	(sms-entry:1thv--)

01.02.051	 1 	224	 Soluble secreted chemokine inhibitor, VCCI 	(sms-entry:1cq3a-)

01.02.052	 1 	299	 Paculovirus p35 	(sms-entry:1p35a-)

01.02.054	 1 	293	 beta-Galactosidase, domain 5 	(sms-entry:1bgla4)

01.02.055	 1 	423	 Copper amine oxidase, domain 3 (catalytic) 	(sms-entry:1oaca1)

01.02.056	 1 	264	 Chondroitinase AC, central domain 	(sms-entry:1cb8a3)

01.02.057	 1 	288	 gp9 	(sms-entry:1qexa-)

01.02.060	 1 	57	 SH3-domain 	(sms-entry:1ckaa-)

01.02.061	 1 	46	 Myosin S1 fragment, N-terminal domain 	(sms-entry:1lvk-1)

01.02.064	 1 	101	 CcdB 	(sms-entry:3vub--)

01.02.065	 1 	53	 DNA-binding domain of retroviral integrase 	(sms-entry:1c0ma1)

01.02.067	 1 	55	 SacY-like RNA-binding domain 	(sms-entry:1auua-)

01.02.069	 1 	64	 N-terminal domains of the minor coat protein g3p 	(sms-entry:1g3p-1)

01.02.070	 1 	72	 Sm motif of small nuclear ribonucleoproteins, SNRNP 	(sms-entry:1d3ba-)

01.02.071	 1 	122	 Ribosomal protein L14 	(sms-entry:1whi--)

01.02.072	 1 	141	 Staphylococcal nuclease 	(sms-entry:2sns--)

01.02.074	 1 	182	 Tissue inhibitor of metalloproteinases, TIMP 	(sms-entry:1br9--)

01.02.076	 1 	282	 Inorganic pyrophosphatase 	(sms-entry:8prka-)

01.02.077	 1 	135	 C-terminal domain of molybdate-dependent transcriptional regulator ModE	(sms-entry:1b9ma2)

01.02.078	 1 	132	 Histidine kinase CheA, C-terminal domain 	(sms-entry:1b3qa2)

01.02.079	 1 	215	 Photosynthetic reaction centre, H-, cytoplasmic domain 	(sms-entry:1qovh1)

01.02.082	 1 	153	 Agglutinin 	(sms-entry:1jlxa1)

01.02.084	 1 	118	 Histidine-rich actin-binding protein (hisactophilin) 	(sms-entry:1hcd--)

01.02.086	 1 	236	 L-fucose isomerase, C-terminal domain 	(sms-entry:1fuia1)

01.02.087	 1 	100	 Translation factors 	(sms-entry:1exma1)

01.02.088	 1 	93	 Elongation factor Tu (EF-Tu), C-terminal domain 	(sms-entry:1exma2)

01.02.091	 1 	80	 mu transposase, C-terminal domain 	(sms-entry:1bco-1)

01.02.093	 1 	148	 Alanine racemase-like, C-terminal domain 	(sms-entry:1bd0a1)

01.02.095	 1 	194	 Isoleucyl-tRNA synthetase (IleRS) editing domain 	(sms-entry:1qu2a2)

01.02.099	 1 	138	 Core binding factor beta 	(sms-entry:1cl3a-)

01.02.101	 1 	46	 Transcription factor IIA (TFIIA), N-terminal domain 	(sms-entry:1ytfc1)

01.02.102	 1 	204	 Herpes virus serine proteinase, assemblin 	(sms-entry:1wpoa-)

01.02.103	 1 	98	 Pyruvate kinase beta-barrel domain 	(sms-entry:1e0ta1)

01.02.105	 1 	120	 Avidin/streptavidin 	(sms-entry:1swua-)

01.02.106	 1 	100	 Metalloprotease inhibitor 	(sms-entry:1smpi-)

01.02.107	 1 	164	 Cyclophilin (peptidylprolyl isomerase) 	(sms-entry:1awqa-)

01.02.108	 1 	106	 Oncogene products 	(sms-entry:1a1x--)

01.02.109	 1 	146	 Extracytoplasmic domain of cation-dependent mannose 6-phosphate receptor 	(sms-entry:1m6pa-)

01.02.110	 1 	210	 Hemopexin-like domain 	(sms-entry:1hxn--)

01.02.111	 1 	235	 Tachylectin-2 	(sms-entry:1tl2a-)

01.02.113	 1 	448	 Soluble quinoprotein glucose dehydrogenase 	(sms-entry:1crua-)

01.02.114	 1 	353	 Thermostable phytase (3-phytase) 	(sms-entry:2pooa-)

01.02.115	 1 	387	 Galactose oxidase, central domain 	(sms-entry:1gof-3)

01.02.116	 1 	355	 Methylamine dehydrogenase, H-chain 	(sms-entry:2bbkh-)

01.02.117	 1 	339	 Trp-Asp repeat (WD-repeat) 	(sms-entry:1gotb-)

01.02.118	 1 	401	 Regulator of chromosome condensation RCC1 	(sms-entry:1a12a-)

01.02.119	 1 	330	 Clathrin heavy-chain terminal domain 	(sms-entry:1bpoa2)

01.02.120	 1 	426	 Prolyl oligopeptidase, N-terminal domain 	(sms-entry:1qfma1)

01.02.121	 1 	571	 Quinoprotein alcohol dehydrogenase 	(sms-entry:1b2na-)

01.02.122	 1 	432	 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 	(sms-entry:1qksa2)

01.02.123	 1 	93	 alpha-Amylases, C-terminal beta-sheet domain 	(sms-entry:1smd-1)

01.02.124	 1 	34	 WW domain 	(sms-entry:1pina1)

01.02.125	 1 	62	 Carbohydrate binding domain 	(sms-entry:1aiw--)

01.02.126	 1 	59	 Head domain of nucleotide exchange factor GrpE 	(sms-entry:1dkga1)

01.02.127	 1 	258	 Carbonic anhydrase 	(sms-entry:2cba--)

01.02.128	 1 	350	 Bacteriochlorophyl A protein 	(sms-entry:4bcl--)

01.02.129	 1 	251	 Outer surface protein A 	(sms-entry:1ospo-)

01.02.130	 1 	163	 Vitelline membrane outer protein-I (VMO-I) 	(sms-entry:1vmoa-)

01.02.131	 1 	206	 delta-Endotoxin (insectocide), middle domain 	(sms-entry:1ciy-2)

01.02.132	 1 	143	 Mannose-binding lectins 	(sms-entry:1c3ka-)

01.02.133	 1 	119	 alpha-D-mannose-specific plant lectins 	(sms-entry:1b2pa-)

01.02.134	 1 	224	 Metalloprotease, C-terminal domain 	(sms-entry:1kapp1)

01.02.138	 1 	440	 Phosphomannose isomerase 	(sms-entry:1pmi--)

01.02.139	 1 	329	 Penicillin syntase 	(sms-entry:1bk0--)

01.02.141	 1 	161	 Regulatory protein AraC 	(sms-entry:2arca-)

01.02.143	 1 	77	 Adenovirus fibre shaft 	(sms-entry:1qiua2)

01.02.144	 1 	80	 Single hybrid motif 	(sms-entry:1bdo--)

01.02.146	 1 	158	 Duplicated hybrid motif 	(sms-entry:1gpr--)

01.02.147	 1 	66	 Antifreeze protein type III 	(sms-entry:1msi--)

01.02.148	 1 	95	 Head decoration protein D (gpD, major capsid protein D) 	(sms-entry:1c5ea-)

01.02.149	 1 	122	 Urease, beta-subunit 	(sms-entry:4ubpb-)

01.02.150	 1 	136	 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) 	(sms-entry:1euwa-)

01.02.151	 1 	102	 ACMNPV telokin-like protein 	(sms-entry:1tul--)

01.02.154	 1 	101	 Cyanovirin-N 	(sms-entry:3ezma-)

01.02.155	 1 	104	 Head-binding domain of phage p22 tailspike protein 	(sms-entry:1lkta-)

01.02.156	 1 	200	 E2 regulatory, transactivation domain 	(sms-entry:1dtoa-)

01.02.157	 1 	180	 alpha-Subunit of urease, composite domain 	(sms-entry:4ubpc1)

01.02.158	 1 	85	 Epsilon subunit of F1F0-ATP synthase N-terminal domain 	(sms-entry:1aqt-2)


Alpha and Beta Proteins 



SMS-Code    Memberes  Seq_Len   Superfamily Name


01.03.001	 1 	250	 Triosephosphate isomerase (TIM) 	(sms-entry:1tpfa-)

01.03.003	 1 	226	 Thiamin phosphate synthase 	(sms-entry:2tpsa-)

01.03.004	 1 	311	 FMN-linked oxidoreductases 	(sms-entry:1dora-)

01.03.005	 1 	341	 Inosine monophosphate dehydrogenase (IMPDH) 	(sms-entry:1zfja1)

01.03.007	 1 	315	 NAD(P)-linked oxidoreductase 	(sms-entry:1ads--)

01.03.013	 1 	688	 Malate synthase G 	(sms-entry:1d8ca-)

01.03.014	 1 	327	 RuBisCo, C-terminal domain 	(sms-entry:8ruca1)

01.03.017	 1 	169	 Quinolinic acid phosphoribosyltransferase, C-terminal domain 	(sms-entry:1qpoa1)

01.03.020	 1 	372	 tRNA-guanine transglycosylase 	(sms-entry:1f3ea-)

01.03.021	 1 	282	 Dihydropteroate synthetase 	(sms-entry:1aj0--)

01.03.022	 1 	357	 Uroporphyrinogen decarboxylase, UROD 	(sms-entry:1uroa-)

01.03.023	 1 	275	 Methylenetetrahydrofolate reductase 	(sms-entry:1b5ta-)

01.03.028	 1 	361	 Cellulases 	(sms-entry:2bvwa-)

01.03.031	 1 	226	 Aconitase, C-terminal domain 	(sms-entry:1c96a1)

01.03.032	 1 	151	 Carbamoyl phosphate synthetase, small subunit N-terminal domain 	(sms-entry:1a9xb1)

01.03.033	 1 	193	 Transferrin receptor ectodomain, apical domain 	(sms-entry:1de4c2)

01.03.035	 1 	89	 Barstar (barnase inhibitor) 	(sms-entry:1ay7b-)

01.03.038	 1 	203	 C-terminal domain of phosphatidylinositol transfer protein sec14p 	(sms-entry:1aua-2)

01.03.039	 1 	116	 SpoIIaa 	(sms-entry:1auz--)

01.03.041	 1 	96	 BRCT domain from DNA-repair protein XRCC1 	(sms-entry:1cdza-)

01.03.042	 1 	154	 beta-subunit of the lumazine synthase/riboflavin synthase complex 	(sms-entry:1rvv1-)

01.03.045	 1 	235	 Catalytic domain of malonyl-CoA ACP transacylase 	(sms-entry:1mla-1)

01.03.046	 1 	156	 Catalase, C-terminal domain 	(sms-entry:1cf9a1)

01.03.050	 1 	137	 Cobalamin (vitamin B12)-binding domain 	(sms-entry:1ccwa-)

01.03.051	 1 	105	 Ornithine decarboxylase N-terminal "wing" domain 	(sms-entry:1c4ka1)

01.03.052	 1 	159	 N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase PurE 	(sms-entry:1qcza-)

01.03.053	 1 	197	 Cutinase-like 	(sms-entry:1cex--)

01.03.055	 1 	214	 Beta-D-glucan exohydrolase, C-terminal domain 	(sms-entry:1ex1a2)

01.03.057	 1 	136	 Type II 3-dehydroquinate dehydratase 	(sms-entry:2dhqa-)

01.03.062	 1 	108	 UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain 	(sms-entry:1dlja3)

01.03.063	 1 	260	 Pyrimidine nucleoside phosphorylase central domain 	(sms-entry:1brwa2)

01.03.065	 1 	93	 N-terminal domain of MurD (UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase) 	(sms-entry:4uaga1)

01.03.067	 1 	171	 Epoxide hydrolase, N-terminal domain 	(sms-entry:1ek1a1)

01.03.072	 1 	266	 Glucosamine 6-phosphate deaminase 	(sms-entry:1deaa-)

01.03.074	 1 	276	 P-loop containing nucleotide triphosphate hydrolases 	(sms-entry:1skyb3)

01.03.075	 1 	161	 Fructose permease, subunit IIb 	(sms-entry:1ble--)

01.03.076	 1 	346	 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)  	(sms-entry:1d0sa-)

01.03.077	 1 	198	 Methylesterase CheB, C-terminal domain 	(sms-entry:1chd--)

01.03.078	 1 	269	 Subtilases 	(sms-entry:1gci--)

01.03.080	 1 	213	 CoA-dependent acyltransferases 	(sms-entry:3cla--)

01.03.081	 1 	159	 Phosphotyrosine protein phosphatases I 	(sms-entry:1d1qa-)

01.03.082	 1 	103	 Enzyme IIB-cellobiose 	(sms-entry:1iiba-)

01.03.087	 1 	117	 Pyruvate kinase, C-terminal domain 	(sms-entry:1e0ta3)

01.03.088	 1 	159	 Leucine aminopeptidase, N-terminal domain 	(sms-entry:1lam-1)

01.03.089	 1 	99	 Anticodon-binding domain of Class II aaRS 	(sms-entry:1htta1)

01.03.090	 1 	179	 Diol dehydratase, beta subunit 	(sms-entry:1diob-)

01.03.092	 1 	218	 Restriction endonuclease-like 	(sms-entry:1dfma-)

01.03.093	 1 	97	 tRNA splicing endonuclease, C-terminal domain 	(sms-entry:1a79a1)

01.03.094	 1 	139	 Eukaryotic RPB5 N-terminal domain 	(sms-entry:1dzfa1)

01.03.096	 1 	210	 beta-carbonic anhydrase 	(sms-entry:1ekja-)

01.03.097	 1 	129	 IIA domain of mannose transporter, IIA-Man 	(sms-entry:1pdo--)

01.03.099	 1 	155	 Creatinase, N-terminal domain 	(sms-entry:1chma1)

01.03.101	 1 	134	 Middle domain of eukaryotic peptide  release factor subunit 1, ERF1 	(sms-entry:1dt9a1)

01.03.102	 1 	88	 Methylated DNA-protein cysteine methyltransferase domain 	(sms-entry:1mgta2)

01.03.103	 1 	162	 Hydrogenase maturating endopeptidase HybD 	(sms-entry:1cfza-)

01.03.104	 1 	280	 Purine and uridine phosphorylases 	(sms-entry:1b8oa-)

01.03.105	 1 	193	 Peptidyl-tRNA hydrolase 	(sms-entry:2pth--)

01.03.106	 1 	220	 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 	(sms-entry:1a2za-)

01.03.108	 1 	298	 LigB subunit of an aromatic-ring-opening dioxygenase LigAB 	(sms-entry:1b4ub-)

01.03.109	 1 	183	 Molybdenumm cofactor biosynthesis protein MogA 	(sms-entry:1di6a-)

01.03.114	 1 	184	 Integrin A (or I) domain 	(sms-entry:1ido--)

01.03.115	 1 	317	 Glutaconate-CoA transferase subunits 	(sms-entry:1poia-)

01.03.116	 1 	253	 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 	(sms-entry:1b0pa4)

01.03.117	 1 	188	 Formyltransferase 	(sms-entry:2gar--)

01.03.120	 1 	227	 Class I glutamine amidotransferases (GAT) 	(sms-entry:1a9xb2)

01.03.121	 1 	238	 Nucleotide-diphospho-sugar transferases 	(sms-entry:1qg8a-)

01.03.122	 1 	256	 alpha/beta-Hydrolases 	(sms-entry:1qj4a-)

01.03.123	 1 	313	 Nucleoside hydrolase 	(sms-entry:2masa-)

01.03.127	 1 	307	 Carbamate kinase 	(sms-entry:1b7ba-)

01.03.128	 1 	206	 Class II aldolase 	(sms-entry:1dzvp-)

01.03.129	 1 	504	 Cytosolic phospholipase A2 catalytic domain 	(sms-entry:1cjya2)

01.03.131	 1 	363	 Isocitrate & isopropylmalate dehydrogenases 	(sms-entry:1cnza-)

01.03.132	 1 	151	 Aspartate/ornithine carbamoyltransferase 	(sms-entry:1otha1)

01.03.133	 1 	105	 Glutamate racemase 	(sms-entry:1b73a1)

01.03.134	 1 	389	 Tryptophan synthase beta subunit-like PLP-dependent enzymes 	(sms-entry:1a5ab-)

01.03.136	 1 	623	 Formate dehydrogenase/DMSO reductase, domains 1-3 	(sms-entry:1dmr-2)

01.03.137	 1 	474	 Aldehyde reductase (dehydrogenase), ALDH 	(sms-entry:1euha-)

01.03.138	 1 	527	 Aconitase, first 3 domains 	(sms-entry:1c96a2)

01.03.139	 1 	190	 Phosphoglucomutase, first 3 domains 	(sms-entry:3pmga1)

01.03.140	 1 	355	 L-fucose isomerase, N-terminal and second domains 	(sms-entry:1fuia2)

01.03.141	 1 	415	 Phosphoglycerate kinase 	(sms-entry:16pk--)

01.03.143	 1 	330	 Glutaminase/Asparaginase 	(sms-entry:4pgaa-)

01.03.144	 1 	320	 Phosphofructokinase 	(sms-entry:1pfka-)

01.03.145	 1 	239	 Cobalt precorrin-4 methyltransferase CbiF 	(sms-entry:1cbf--)

01.03.146	 1 	532	 Phosphoenolpyruvate carboxykinase (ATP-oxaloacetate carboxy-liase) 	(sms-entry:1ayl--)

01.03.149	 1 	305	 Periplasmic binding protein-like I 	(sms-entry:8abp--)

01.03.152	 1 	312	 Fe-only hydrogenase 	(sms-entry:1hfel1)

01.03.153	 1 	150	 Cytidine deaminase 	(sms-entry:1ctt-1)


Alpha and Beta Proteins 



SMS-Code    Memberes  Seq_Len   Superfamily Name


01.04.005	 1 	123	 RNase A-like 	(sms-entry:1dy5a-)

01.04.006	 1 	103	 Prion protein domain 	(sms-entry:1ag2--)

01.04.007	 1 	48	 LysM domain 	(sms-entry:1e01a-)

01.04.008	 1 	100	 Urease, gamma-subunit 	(sms-entry:4ubpa-)

01.04.009	 1 	67	 Interleukin 8-like chemokines 	(sms-entry:1b3aa-)

01.04.012	 1 	61	 Penicillin-binding protein 2x (pbp-2x), c-terminal domain 	(sms-entry:1qmea1)

01.04.016	 1 	79	 Ubiquitin-related 	(sms-entry:1euvb-)

01.04.017	 1 	83	 First domain of FERM 	(sms-entry:1ef1a3)

01.04.019	 1 	87	 CAD domain 	(sms-entry:1c9fa-)

01.04.020	 1 	121	 Staphylokinase/streptokinase 	(sms-entry:2sak--)

01.04.022	 1 	117	 Superantigen toxins, C-terminal domain 	(sms-entry:3seb-2)

01.04.023	 1 	76	 Translation initiation factor IF3, N-terminal domain 	(sms-entry:1tif--)

01.04.024	 1 	100	 Glutamine synthetase, N-terminal domain 	(sms-entry:1f52a1)

01.04.027	 1 	95	 Copper amine oxidase, domains 1 and 2 	(sms-entry:1oaca2)

01.04.029	 1 	83	 Uracil-DNA glycosylase inhibitor protein 	(sms-entry:1ugia-)

01.04.030	 1 	66	 Transcriptional coactivator PC4 C-terminal domain 	(sms-entry:1pcfa-)

01.04.031	 1 	181	 MHC antigen-recognition domain 	(sms-entry:1duza2)

01.04.032	 1 	160	 Ubiquitin conjugating enzyme 	(sms-entry:1u9aa-)

01.04.033	 1 	130	 Diaminopimelate epimerase 	(sms-entry:1bwza1)

01.04.034	 1 	221	 Green fluorescent protein, GFP 	(sms-entry:1ema--)

01.04.035	 1 	265	 Transcriptional factor tubby, C-terminal domain 	(sms-entry:1c8za-)

01.04.036	 1 	120	 Pilin 	(sms-entry:1dzoa-)

01.04.037	 1 	182	 Acidic mitochondrial matrix protein p32 	(sms-entry:1p32a-)

01.04.039	 1 	84	 Colicin E3 immunity protein 	(sms-entry:3eipa-)

01.04.040	 1 	73	 Chitinase A, insertion domain 	(sms-entry:1edqa3)

01.04.041	 1 	73	 Ribosomal protein S19 	(sms-entry:1qkfa-)

01.04.042	 1 	67	 Allophycocyanin linker chain  (domain) 	(sms-entry:1b33n-)

01.04.043	 1 	106	 Cdc48 domain 2-like 	(sms-entry:1qcsa2)

01.04.044	 1 	122	 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 	(sms-entry:1qtoa-)

01.04.045	 1 	99	 DNA-binding domain of Mlu1-box binding protein MBP1 	(sms-entry:1bm8--)

01.04.046	 1 	173	 Heme-binding protein A (HasA) 	(sms-entry:1b2va-)

01.04.047	 1 	62	 CBS-domain 	(sms-entry:1zfja2)

01.04.049	 1 	85	 PIN, a protein inhibitor of neuronal nitric oxide synthase 	(sms-entry:1cmia-)

01.04.050	 1 	63	 CI-2 family of serine protease inhibitors 	(sms-entry:1csei-)

01.04.051	 1 	117	 CO dehydrogenase molybdoprotein N-domain-like 	(sms-entry:1alo-3)

01.04.052	 1 	115	 Quinolinic acid phosphoribosyltransferase, N-terminal domain 	(sms-entry:1qpoa2)

01.04.053	 1 	103	 Pyrimidine nucleoside phosphorylase C-terminal domain 	(sms-entry:1brwa3)

01.04.055	 1 	142	 Elongation factor Ts (EF-Ts), dimerisation domain 	(sms-entry:1tfe--)

01.04.056	 1 	115	 Fe,Mn superoxide dismutase (SOD), C-terminal domain 	(sms-entry:1bsma2)

01.04.057	 1 	68	 Ribosomal protein L7/12, C-terminal fragment 	(sms-entry:1ctf--)

01.04.059	 1 	60	 RecA protein, C-terminal domain 	(sms-entry:2reb-2)

01.04.061	 1 	171	 Signal recognition particle alu RNA binding heterodimer, SRP9/14 	(sms-entry:1914--)

01.04.063	 1 	88	 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 	(sms-entry:1pda-2)

01.04.064	 1 	74	 KH-domain 	(sms-entry:1dtja-)

01.04.065	 1 	80	 Alpha-lytic protease prodomain 	(sms-entry:3proc1)

01.04.066	 1 	121	 GMP synthetase, C-terminal, dimerisation domain 	(sms-entry:1gpma3)

01.04.067	 1 	113	 GTPase Era C-terminal domain 	(sms-entry:1egaa2)

01.04.068	 1 	141	 Enolase N-terminal domain-like 	(sms-entry:1onea2)

01.04.069	 1 	108	 Ribosomal protein L22 	(sms-entry:1bxea-)

01.04.071	 1 	81	 DNA damage-inducible protein DinI 	(sms-entry:1ejka-)

01.04.073	 1 	100	 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 	(sms-entry:1d09b1)

01.04.076	 1 	112	 Prokaryotic signal transducing protein 	(sms-entry:2pii--)

01.04.077	 1 	150	 Nucleoside diphosphate kinases 	(sms-entry:1npk--)

01.04.078	 1 	85	 RNA-binding domain 	(sms-entry:1ha1-1)

01.04.079	 1 	85	 Viral DNA-binding domain 	(sms-entry:2bopa-)

01.04.080	 1 	139	 RuBisCO, large subunit, small (N-terminal) domain 	(sms-entry:8ruca2)

01.04.081	 1 	98	 Acylphosphatase 	(sms-entry:2acy--)

01.04.082	 1 	90	 Elongation factor G (EF-G), domain V 	(sms-entry:1dar-4)

01.04.083	 1 	91	 Guanine nucleotide exchange factor domain from elongation factor-1 beta 	(sms-entry:1b64--)

01.04.084	 1 	94	 Anticodon-binding domain of PheRS 	(sms-entry:1b7yb4)

01.04.085	 1 	97	 Ribosomal protein S6 	(sms-entry:1loua-)

01.04.086	 1 	60	 Ribosomal protein L30 	(sms-entry:1bxya-)

01.04.087	 1 	72	 Metal-binding domain 	(sms-entry:1cc8a-)

01.04.089	 1 	113	 Carboxypeptidase G2, dimerisation domain 	(sms-entry:1cg2a2)

01.04.090	 1 	117	 NAD-binding domain of HMG-CoA reductase 	(sms-entry:1dqaa1)

01.04.091	 1 	70	 Probable ACP-binding domain of malonyl-CoA ACP transacylase 	(sms-entry:1mla-2)

01.04.092	 1 	67	 CheY-binding domain of CheA 	(sms-entry:1eayc-)

01.04.093	 1 	79	 Killer toxin KP6 alpha-subunit 	(sms-entry:1kp6a-)

01.04.094	 1 	122	 Translational regulator protein regA 	(sms-entry:1regx-)

01.04.095	 1 	190	 Adenylyl and guanylyl cyclase catalytic domain 	(sms-entry:1azsa-)

01.04.096	 1 	158	 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 	(sms-entry:1hka--)

01.04.098	 1 	287	 FAD-linked oxidases, C-terminal domain 	(sms-entry:1qlta1)

01.04.099	 1 	148	 Formylmethanofuran:tetrahydromethanopterin formyltransferase 	(sms-entry:1ftra1)

01.04.100	 1 	179	 Formiminotransferase domain of formiminotransferase-cyclodeaminase 	(sms-entry:1qd1a1)

01.04.101	 1 	108	 Pseudouridine synthase I 	(sms-entry:1dj0a1)

01.04.102	 1 	60	 Sulfite reductase, domains 1 and 3 	(sms-entry:1aop-1)

01.04.104	 1 	288	 mRNA triphosphatase CET1 	(sms-entry:1d8ha-)

01.04.105	 1 	83	 eIF1-like 	(sms-entry:1d1ra-)

01.04.108	 1 	104	 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain 	(sms-entry:1dm9a-)

01.04.109	 1 	131	 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 	(sms-entry:1bs2a3)

01.04.110	 1 	184	 Ribosome recycling factor, RRF 	(sms-entry:1dd5a-)

01.04.111	 1 	88	 Translation initiation factor IF3 	(sms-entry:1tig--)

01.04.113	 1 	92	 C-terminal domain of TolA 	(sms-entry:1tola2)

01.04.115	 1 	68	 Cyanase C-terminal domain 	(sms-entry:1dw9a2)

01.04.116	 1 	123	 RuBisCO, small subunit 	(sms-entry:8ruci-)

01.04.117	 1 	99	 Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 	(sms-entry:1dcoa-)

01.04.118	 1 	71	 C-terminal domain of arginine repressor 	(sms-entry:1b4ba-)

01.04.119	 1 	105	 Dimerization subdomain of RNA polymerase alpha subunit N-terminal domain 	(sms-entry:1bdfa1)

01.04.120	 1 	133	 Rrokaryotic AspRS, insert domain 	(sms-entry:1c0aa2)

01.04.121	 1 	74	 tRNA splicing endonuclease, N-terminal domain 	(sms-entry:1a79a2)

01.04.122	 1 	62	 GYF domain 	(sms-entry:1gyfa-)

01.04.123	 1 	72	 RPB5-like RNA polymerase subunit 	(sms-entry:1dzfa2)

01.04.124	 1 	127	 HRPABC14.4, essential subunit of RNA polymerases I, II and III (RPB6) 	(sms-entry:1qkla-)

01.04.128	 1 	166	 Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain 	(sms-entry:1clia1)

01.04.130	 1 	164	 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 	(sms-entry:1gado2)

01.04.131	 1 	86	 Copper amine oxidase, domain N 	(sms-entry:1oaca4)

01.04.132	 1 	120	 C-terminal domain of frataxin 	(sms-entry:1dlxa-)

01.04.133	 1 	217	 Bactericidal permeability-increasing protein, BPI 	(sms-entry:1ewfa1)

01.04.134	 1 	107	 Subtilisin inhibitor 	(sms-entry:2sici-)

01.04.135	 1 	129	 RNA bacteriophage capsid protein 	(sms-entry:1msc--)

01.04.136	 1 	178	 Translation initiation factor eIF4e 	(sms-entry:1ej1a-)

01.04.137	 1 	115	 FAD/NAD-linked reductases, dimerisation (C-terminal) domain 	(sms-entry:3grs-3)

01.04.138	 1 	108	 Carbon monoxide (CO) dehydrogenase flavoprotein C-domain 	(sms-entry:1qj2c1)

01.04.139	 1 	71	 SRF-like 	(sms-entry:1egwa-)

01.04.140	 1 	134	 The origin DNA-binding domain of SV40 T-antigen 	(sms-entry:1tbd--)

01.04.141	 1 	200	 NADH oxidase/flavin reductase 	(sms-entry:1nox--)

01.04.142	 1 	138	 N-terminal domain of eukaryotic peptide  release factor subunit 1,ERF1 	(sms-entry:1dt9a3)

01.04.144	 1 	137	 Bacterial chitobiase, Domain 2 	(sms-entry:1qba-4)

01.04.146	 1 	85	 Histidine-containing phosphocarrier proteins (HPr) 	(sms-entry:1opd--)

01.04.147	 1 	78	 Glucose permease domain IIB 	(sms-entry:1iba--)

01.04.150	 1 	101	 Cell cycle regulatory proteins 	(sms-entry:1puc--)

01.04.152	 1 	94	 Ribosomal protein L9 C-domain 	(sms-entry:1div-1)

01.04.154	 1 	104	 Regulatory factor Nef 	(sms-entry:1efnb-)

01.04.155	 1 	227	 Mosquitocidal delta-endotoxin CytB 	(sms-entry:1cby--)

01.04.157	 1 	114	 Clathrin adaptor appendage domain 	(sms-entry:1qtsa2)

01.04.158	 1 	189	 Ran-binding protein mog1p 	(sms-entry:1eq6a-)

01.04.161	 1 	127	 Profilin (actin-binding protein) 	(sms-entry:3nul--)

01.04.163	 1 	135	 Pathogenesis-related PR-1 proteins 	(sms-entry:1cfe--)

01.04.164	 1 	145	 IIA domain of mannitol-specific and ntr phosphotransherase EII 	(sms-entry:1a3aa-)

01.04.165	 1 	129	 Nucleoside triphosphate pyrophosphorylase (MutT) 	(sms-entry:1mut--)

01.04.166	 1 	188	 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 	(sms-entry:1ush-1)

01.04.167	 1 	150	 Hypothetica protein HI1434 (YbaK homologue) 	(sms-entry:1dbua-)

01.04.168	 1 	259	 Thymidylate synthase/dCMP hydroxymethylase 	(sms-entry:1qqqa-)

01.04.169	 1 	146	 Bacteriophage T7 lysozyme (Zn amidase) 	(sms-entry:1lba--)

01.04.171	 1 	88	 Cytochrome b5 	(sms-entry:1cyo--)

01.04.172	 1 	77	 DNA topoisomerase I domain 	(sms-entry:1vcc--)

01.04.173	 1 	213	 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 	(sms-entry:1byqa-)

01.04.174	 1 	168	 Sporulation responce regulatory protein Spo0B 	(sms-entry:1ixma-)

01.04.175	 1 	190	 Ribonuclease Rh-like 	(sms-entry:1bk7a-)

01.04.176	 1 	161	 Ornithine decarboxylase C-terminal domain 	(sms-entry:1c4ka3)

01.04.177	 1 	360	 Amidinotransferase 	(sms-entry:1jdw--)

01.04.178	 1 	281	 Creatinase/aminopeptidase 	(sms-entry:1b6a-2)

01.04.181	 1 	141	 Phosphoglucomutase, C-terminal domain 	(sms-entry:3pmga4)

01.04.183	 1 	102	 S-adenosylmethionine synthetase. MAT 	(sms-entry:1mxa-1)

01.04.186	 1 	597	 Molybdemum cofactor-binding domain 	(sms-entry:1alo-4)

01.04.187	 1 	171	 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 	(sms-entry:1aop-3)

01.04.188	 1 	187	 The spindle assembly checkpoint protein mad2 	(sms-entry:1duja-)

01.04.189	 1 	152	 Phospholipase D/nuclease 	(sms-entry:1byra-)

01.04.190	 1 	141	 Monooxygenase (hydroxylase) regulatory protein 	(sms-entry:1ckv--)

01.04.191	 1 	209	 B3/B4 domain of PheRS, PheT 	(sms-entry:1b7yb6)

01.04.192	 1 	175	 Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain 	(sms-entry:1clia2)

01.04.193	 1 	130	 Ribosomal protein S8 	(sms-entry:1seia-)

01.04.194	 1 	75	 Ribosomal protein L6 	(sms-entry:1rl6a1)

01.04.200	 1 	198	 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 	(sms-entry:1uxy-1)

01.04.201	 1 	316	 Methenyltetrahydromethanopterin cyclohydrolase 	(sms-entry:1qlma-)

01.04.202	 1 	350	 Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap) 	(sms-entry:1c4za-)

01.04.203	 1 	192	 Nitrile hydratase alpha  	(sms-entry:2ahja-)

01.04.204	 1 	228	 4'-Phosphopantetheinyl transferase SFP 	(sms-entry:1qr0a-)

01.04.205	 1 	268	 DNase I-like 	(sms-entry:1ako--)

01.04.206	 1 	210	 Aldehyde ferredoxin oxidoreductase, N-terminal domain 	(sms-entry:1b25a2)

01.04.208	 1 	363	 L-aminopeptidase D-Ala-esterase/amidase 	(sms-entry:1b65a-)

01.04.209	 1 	309	 Histidine decarboxylase 	(sms-entry:1pya-1)

01.04.210	 1 	305	 S-adenosylmethionine decarboxylase 	(sms-entry:1jen-1)

01.04.212	 1 	363	 Protein serine/threonine phosphatase 2C 	(sms-entry:1a6q--)

01.04.214	 1 	416	 Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit TrpE 	(sms-entry:1qdla-)

01.04.217	 1 	123	 SMAD MH1 domain 	(sms-entry:1mhda-)

01.04.220	 1 	168	 Peptide deformylase 	(sms-entry:1bs4a-)

01.04.221	 1 	146	 Succinate dehydrogenase/fumarate reductase catalytic domain 	(sms-entry:1qjda3)

01.04.223	 1 	112	 Scavenger receptor cysteine-rich (SRCR) domain 	(sms-entry:1by2--)

01.04.224	 1 	96	 A heparin-binding domain 	(sms-entry:1mwpa-)

01.04.225	 1 	249	 Fibrinogen C-terminal domains 	(sms-entry:1fib--)

01.04.226	 1 	297	 gp120 core 	(sms-entry:1gc1g-)

01.04.227	 1 	327	 Methionine synthase (activation domain) 	(sms-entry:1msk--)

01.04.228	 1 	416	 Nitric oxide (NO) synthase oxygenase domain 	(sms-entry:1nsea-)

01.04.229	 1 	82	 Penicillin-binding protein 2x (pbp-2x), N-terminal domain 	(sms-entry:1qmea3)

01.04.230	 1 	250	 Sulfite oxidase, middle catalytic domain 	(sms-entry:1soxa3)

01.04.231	 1 	416	 Fumarylacetoacetate hydrolase, FAH 	(sms-entry:1qqja-)

01.04.232	 1 	307	 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 	(sms-entry:1dmwa-)

01.04.233	 1 	125	 Substrate-binding domain of HMG-CoA reductase 	(sms-entry:1dqaa2)

01.04.234	 1 	311	 Conserved core of transcriptional regulatory protein vp16 	(sms-entry:16vpa-)

01.04.235	 1 	121	 Insert subdomain of RNA polymerase alpha subunit N-terminal domain 	(sms-entry:1bdfa2)

01.04.236	 1 	208	 Baseplate structural protein gp11 	(sms-entry:1el6a-)

01.04.237	 1 	75	 Phycoerythrin 545 alpha-subunits 	(sms-entry:1qgwa-)


Multi-Domain Proteins  



SMS-Code    Memberes  Seq_Len   Superfamily Name


01.05.002	 1 	305	 Replication terminator protein (Tus) 	(sms-entry:1ecra-)

01.05.003	 1 	260	 beta-Lactamase/D-ala carboxypeptidase 	(sms-entry:1es5a-)

01.05.004	 1 	250	 ADP ribosyl cyclase 	(sms-entry:1lbea-)

01.05.005	 1 	497	 Heme-linked catalases 	(sms-entry:1dgfa-)

01.05.006	 1 	232	 Acyl-CoA dehydrogenase (flavoprotein), N-terminal and middle domains 	(sms-entry:1egda2)

01.05.010	 1 	245	 Prokaryotic type I DNA topoisomerase 	(sms-entry:1cy9a-)

01.05.011	 1 	679	 Type II DNA topoisomerase 	(sms-entry:1bjt--)

01.05.012	 1 	289	 DNA topoisomerase IV, alpha subunit 	(sms-entry:1d3ya-)

01.05.013	 1 	310	 DnaG catalytic core 	(sms-entry:1dd9a-)

01.05.014	 1 	221	 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 	(sms-entry:1ois--)

01.05.016	 1 	534	 Nickel-iron hydrogenase, large subunit 	(sms-entry:1h2rl-)

01.05.017	 1 	267	 Nickel-iron hydrogenase, small subunit 	(sms-entry:1h2rs-)

01.05.018	 1 	219	 Heat shock protein 70kD (HSP70), C-terminal, substrate-binding fragment 	(sms-entry:1dkxa-)

01.05.019	 1 	245	 L-2-Haloacid dehalogenase 	(sms-entry:1qq5a-)

01.05.020	 1 	381	 Dehydroquinate synthase, DHQS 	(sms-entry:1dqsa-)

01.05.021	 1 	509	 Firefly luciferase-like 	(sms-entry:1amua-)

01.05.022	 1 	224	 Ribosomal protein L1 	(sms-entry:1ad2--)

01.05.023	 1 	556	 Neuronal Sec1, NSec1 	(sms-entry:1dn1a-)

01.05.024	 1 	553	 Hybrid cluster protein (prismane protein) 	(sms-entry:1e1da-)

01.05.025	 1 	845	 BTV inner layer core protein vp3 	(sms-entry:2btva-)


Membrane and Cell Surface Proteins 



SMS-Code    Memberes  Seq_Len   Superfamily Name


01.06.001	 1 	197	 Colicin 	(sms-entry:1cola-)

01.06.002	 1 	181	 Diphtheria toxin, middle domain 	(sms-entry:1ddt-3)

01.06.003	 1 	223	 delta-Endotoxin (insectocide), N-terminal domain 	(sms-entry:1ciy-3)

01.06.004	 1 	143	 Bcl-2 inhibitors of programmed cell death 	(sms-entry:1maz--)

01.06.006	 1 	222	 Membrane all-alpha 	(sms-entry:1c3wa-)

01.06.007	 1 	56	 Light-harvesting complex subunits 	(sms-entry:1lgha-)

01.06.008	 1 	148	 Outer membrane protein 	(sms-entry:1qj8a-)

01.06.009	 1 	0	 Outer membrane phospholipase A (OMPLA) 	(sms-entry:1qd6.1)

01.06.011	 1 	423	 Integral outer membrane protein TolC, efflux pump component 	(sms-entry:1ek9a-)

01.06.012	 1 	292	 Leukocidin (pore-forming toxin) 	(sms-entry:1lkfa-)

01.06.014	 1 	366	 (Pro)aerolysin, pore-forming lobe 	(sms-entry:1prea2)

01.06.015	 1 	471	 Perfringolysin 	(sms-entry:1pfo--)

01.06.016	 1 	302	 Envelope glycoprotein, central and dimerisation domains 	(sms-entry:1svb-2)

01.06.017	 1 	665	 Anthrax protective antigen 	(sms-entry:1acc--)


Small Proteins 



SMS-Code    Memberes  Seq_Len   Superfamily Name


01.07.001	 1 	46	 Insulin-like 	(sms-entry:1pid-1)

01.07.002	 1 	48	 Heat-stable enterotoxin B 	(sms-entry:1ehs--)

01.07.003	 1 	54	 Neurotoxin B-IV 	(sms-entry:1vib--)

01.07.005	 1 	29	 Plant inhibitors of proteinases and amylases 	(sms-entry:2btci-)

01.07.007	 1 	34	 Gurmarin, a sweet taste-suppressing polypeptide 	(sms-entry:1c4ea-)

01.07.010	 1 	36	 Cellulose-binding domain 	(sms-entry:1az6--)

01.07.011	 1 	150	 IGF binding domain 	(sms-entry:1igra3)

01.07.012	 1 	39	 Colipase-like 	(sms-entry:1lpba1)

01.07.014	 1 	17	 Bromelain inhibitor VI (cysteine protease inhibitor) 	(sms-entry:1bi6-1)

01.07.015	 1 	61	 Bowman-Birk inhibitor, BBI 	(sms-entry:1c2aa1)

01.07.016	 1 	47	 Elafin-like 	(sms-entry:1flei-)

01.07.018	 1 	30	 N-terminal domain of granulin-1 	(sms-entry:1qgma-)

01.07.019	 1 	36	 Proteinase inhibitor PMP-C 	(sms-entry:1pmc--)

01.07.021	 1 	40	 Amb V allergen 	(sms-entry:1bbg--)

01.07.024	 1 	30	 Defensin-like 	(sms-entry:1dfna-)

01.07.025	 1 	92	 Hairpin loop containing domain of hepatocyte growth factor 	(sms-entry:1bhta1)

01.07.026	 1 	27	 Neurotoxin III (ATX III) 	(sms-entry:1ans--)

01.07.027	 1 	37	 Ligand-binding domain of low-density lipoprotein receptor 	(sms-entry:1ajj--)

01.07.028	 1 	46	 Crambin-like 	(sms-entry:1ejga-)

01.07.031	 1 	52	 Trefoil 	(sms-entry:2pspa1)

01.07.033	 1 	62	 Complement control module/SCR domain 	(sms-entry:1quba1)

01.07.034	 1 	34	 Sea anemone toxin k 	(sms-entry:1bei--)

01.07.035	 1 	70	 Blood coagulation inhibitor (disintegrin) 	(sms-entry:1fvl--)

01.07.036	 1 	125	 Methylamine dehydrogenase, L  	(sms-entry:2bbkl-)

01.07.037	 1 	61	 Serine proterase inhibitors 	(sms-entry:1eaic-)

01.07.038	 1 	74	 TB module/8-cys domain 	(sms-entry:1apj--)

01.07.039	 1 	59	 TNF receptor-like 	(sms-entry:1exta1)

01.07.040	 1 	55	 Heparin-binding domain from vascular endothelial growth factor 	(sms-entry:1vgh--)

01.07.041	 1 	51	 Antifungal protein (AGAFP) 	(sms-entry:1afp--)

01.07.042	 1 	46	 Fibronectin type I module 	(sms-entry:1fbr-1)

01.07.043	 1 	65	 Thyroglobulin type-1 domain 	(sms-entry:1icfi-)

01.07.044	 1 	50	 Type X cellulose binding domain, CBDX 	(sms-entry:1ct7a-)

01.07.045	 1 	46	 Agouti related protein (MARP) 	(sms-entry:1qu8a-)

01.07.046	 1 	38	 GLA-domain 	(sms-entry:1danl3)

01.07.047	 1 	47	 Cholecystokinin A receptor, N-domain 	(sms-entry:1d6ga-)

01.07.048	 1 	45	 HIV-1 VPU cytoplasmic domain 	(sms-entry:1vpu--)

01.07.049	 1 	50	 Ribosomal protein S18 	(sms-entry:1ekcc-)

01.07.050	 1 	85	 HIPIP (high potential iron protein) 	(sms-entry:1b0ya-)

01.07.051	 1 	109	 Ferredoxin thioredoxin reductase (FTR), catalytic beta  	(sms-entry:1dj7a-)

01.07.052	 1 	29	 Classic zinc finger, C2H2 	(sms-entry:1a1ha1)

01.07.053	 1 	39	 Zn2/Cys6 DNA-binding domain 	(sms-entry:1hwtc1)

01.07.055	 1 	55	 Retrovirus zinc finger-like domains 	(sms-entry:1a1ta-)

01.07.056	 1 	35	 Methionyl-tRNA synthetase (MetRS), Zn-domain 	(sms-entry:1qqta3)

01.07.057	 1 	35	 Microbial and mitochondrial ADK, insert "zinc finger" domain 	(sms-entry:1zin-2)

01.07.059	 1 	159	 Casein kinase II beta subunit 	(sms-entry:1qf8a-)

01.07.061	 1 	53	 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 	(sms-entry:1d09b2)

01.07.062	 1 	37	 Ribosomal protein L36 	(sms-entry:1dfea-)

01.07.063	 1 	39	 B-box zinc-binding domain 	(sms-entry:1fre--)

01.07.064	 1 	86	 RING finger domain, C3HC4 	(sms-entry:1rmd-2)

01.07.065	 1 	122	 Pyk2-associated protein beta ARF-GAP domain 	(sms-entry:1dcqa2)

01.07.067	 1 	42	 Zinc domain conserved in yeast copper-regulated transcription factors 	(sms-entry:1co4a-)

01.07.068	 1 	92	 Ada DNA repair protein, N-terminal domain (N-Ada 10) 	(sms-entry:1adn--)

01.07.069	 1 	50	 Protein kinase cystein-rich domain (cys2, phorbol-binding domain) 	(sms-entry:1ptq--)

01.07.070	 1 	67	 Phosphatidylinositol-3-phosphate binding domain 	(sms-entry:1vfya-)

01.07.071	 1 	92	 Zn-binding domains of ADDBP 	(sms-entry:1anv-2)

01.07.072	 1 	101	 Inhibitor of apoptosis (IAP) repeat 	(sms-entry:1qbha-)