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C-type lectin-like

MMS-Code :     02.04.222
Class :    Alpha and Beta Proteins (a+b)
Number of Members :     7
Average Size :     107


Align Your Sequence(s) Genome Distribution Functional Motifs of SF Structural Motifs of SF

PDB
Code
Start
Residue
Start
Chain
End
Residue
End
Chain
Protein
Size
Name Source Resolution R-factor
1b6e-- stucture rasmol strucure 59 - 179 - 121 cd94 Homo sapiens 2.60 99.90
1byfb- stucture rasmol strucure 2 B 124 B 123 polyandrocarpa lectin Polyandrocarpa misakiensis 2.00 99.90
1cwva5 stucture rasmol strucure 887 A 986 A 100 invasin Yersinia pseudotuberculosis 2.30 99.90
1e1ba2 stucture rasmol strucure 90 A 187 A 98 intimin Escherichia coli 9.99 -1.00
1prea1 stucture rasmol strucure 2 A 84 A 83 proaerolysin Aeromonas hydrophila 2.80 99.90
1qo3c- stucture rasmol strucure 126 C 258 C 128 ly49a Mus musculus 2.30 99.90
1tsg-- stucture rasmol strucure 1 - 98 - 98 tsg-6 Homo sapiens 9.99 -1.00
|pir | html | colour postscript | latex | superposed-coordinates|


Percentage Identity Matrix

Structural Phylogeny (RMSD of equivalent regions)

            1byfb- 1qo3c- 1b6e-- 1prea1 1cwva5 1e1ba2 1tsg--
      1byfb- 100.0   20.9   19.3   12.5   11.4   12.8   11.9 
      1qo3c-  20.9  100.0   26.3    8.7   12.0    8.8    9.2 
      1b6e--  19.3   26.3  100.0   13.0   11.1   13.9    8.9 
      1prea1  12.5    8.7   13.0  100.0   16.0    9.1   14.1 
      1cwva5  11.4   12.0   11.1   16.0  100.0   15.3   10.1 
      1e1ba2  12.8    8.8   13.9    9.1   15.3  100.0   15.7 
      1tsg--  11.9    9.2    8.9   14.1   10.1   15.7  100.0 
            1byfb- 1qo3c- 1b6e-- 1prea1 1cwva5 1e1ba2 1tsg--

         high   highest percentage identity 
         low    lowest percentage identity

Structural Phylogeny (RMSD of equivalent regions)

Alignment Based On Similarities In Structural Features
(COMPARER Alignment)




1byfb-( 2 ) dyeilfs-d---etmnyadAgtyÇqsr-gmaLV

1qo3c-( 126 ) stvldslqhkvywfçygmkÇYyfV-m---drktwsgÇkqtÇqss-sLsLL

1b6e--( 59 ) çs-çqe-kWvgyrçnçYfiS-s---eqktwneSrhlÇasq-kSsLL

1prea1( 2 ) epVyp--d-qLrlfs-lgqgv-Çgd--kyrpV

1cwva5( 887 ) nrwiydggr---slvssleAsrqÇqgsdmSaVL

1e1ba2( 90 ) livpnms---krvTyndavntÇknf-ggklp

1tsg--( 1 ) gVyhrEArsgkykltyaeAkavÇefeGg-hlA

bbb aaaaaaa



1byfb-( 30 ) SsAMrd-------stmvkaIla-fTevk----g--hdYWVGAd-Nlqdga

1qo3c-( 176 ) k--Idd-------edelkfLql-vVp------s--dsCWVGLsydnkkk-

1b6e--( 98 ) q--Lqn-------tdELdfm-s-ss-------q--qfYWIGLsyseeht-

1prea1( 27 ) nreeAqsvk----snIvgmMg--------------qwqiSgLan------

1cwva5( 917 ) essrATngtrapdgTlwGewgs-ltays----sdwqsgeYWVkkts----

1e1ba2( 117 ) -s---------sqnelEnvfkawgAankyeyykssqtiiswvqqt-----

1tsg--( 32 ) --tyKql-------eAar------------kiGFhvçAAGWma------k

aaa bbbb



1byfb-( 65 ) ynFlWndgvsLptdsdlWSpnePsnpqswqLÇVQIwsky-nlLDD-vgçg

1qo3c-( 207 ) -dWawidnrpskL--al---ntrkYnirdggÇMlLskt---rldN-gnçd

1b6e--( 127 ) -aWlWengsaLsq--ylF-psfetFntk--nÇIAYnPn--gnAld-esçe

1prea1( 53 ) ------------------------------gwVIMGpgynGeIkpgtas-

1cwva5( 958 ) -----------------------------tdfEtMnMdt-Galqp-gpa-

1e1ba2( 152 ) ------------------aqdaks-----gvaSTyDLvk-qnplnnikas

1tsg--( 55 ) GrVGyPIVkp-----g-pnçgFg--------------kt-giidygIrln

bbbb bb



1byfb-( 113 ) -garrVIÇekel--d

1qo3c-( 247 ) -qvfiÇIÇgkrl--d

1b6e--( 168 ) -dknrYIÇKqql--i

1prea1( 72 ) ---nTWÇYptnpvtge

1cwva5( 976 ) -ylAfPLÇAlsi

1e1ba2( 178 ) -esNAyatçvk

1tsg--( 84 ) rserWDAYÇynphak

bbbbb






Key

solvent inaccessible UPPER CASE X
solvent accesible lower case x
alpha helix red x
beta strand blue x
3 - 10 helix maroon x
hydrogen bond to main chain amide bold x
hydrogen bond to mainchain carbonyl underline x
disulphide bond cedilla ç
positive phi italic x


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